ENSDARG00000002168


Danio rerio

Features
Gene ID: ENSDARG00000002168
  
Biological name :tra2b
  
Synonyms : tra2b / transformer 2 beta homolog
  
Possible biological names infered from orthology : Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA. / P62995 / P62996
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 12579077
Gene end: 12595003
  
Corresponding Affymetrix probe sets: Dr.9221.1.S1_at (Zebrafish Array)   NM_201197_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000153695
Ensembl peptide - ENSDARP00000016139
NCBI entrez gene - 394172     See in Manteia.
RefSeq - NM_201197
RefSeq Peptide - NP_957491
swissprot - B0V332
ZFIN ID - ZDB-GENE-040426-1094
Ensembl - ENSDARG00000002168
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRA2BENSGALG00000006531Gallus gallus
 TRA2BENSG00000136527Homo sapiens
 Tra2bENSMUSG00000022858Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tra2a / transformer 2 alpha homolog / Q13595* / transformer 2 alpha*ENSDARG0000000786368
rbmx / Q7ZWA3 / RNA binding motif protein, X-linked / A6NDE4* / A6NEQ0* / Gm3376* / Gm4064* / Gm7324* / O35698* / O75526* / P0C7P1* / P0DJD3* / P38159* / Q15415* / Q60990* / Q8N7X1* / Q91VM...ENSDARG0000001424426
cirbpb / cold inducible RNA binding protein b / CIRBP* / P60824* / Q14011* / cold inducible RNA binding protein*ENSDARG0000001335118
cirbpa / cold inducible RNA binding protein a / CIRBP* / Q14011* / cold inducible RNA binding protein*ENSDARG0000010367217


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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