ENSGALG00000006531


Gallus gallus

Features
Gene ID: ENSGALG00000006531
  
Biological name :TRA2B
  
Synonyms : TRA2B / transformer 2 beta homolog
  
Possible biological names infered from orthology : Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA. / P62995 / P62996
  
Species: Gallus gallus
  
Chr. number: 9
Strand: 1
Band:
Gene start: 4389946
Gene end: 4408369
  
Corresponding Affymetrix probe sets: Gga.4158.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050676
Ensembl peptide - ENSGALP00000010541
NCBI entrez gene - 395403     See in Manteia.
RefSeq - XM_015276812
RefSeq - NM_204678
RefSeq - XM_015276811
RefSeq Peptide - NP_990009
swissprot - Q9DDU8
swissprot - A0A1D5PD35
Ensembl - ENSGALG00000006531
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tra2bENSDARG00000002168Danio rerio
 TRA2BENSG00000136527Homo sapiens
 Tra2bENSMUSG00000022858Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRA2A / transformer-2 protein homolog alpha / Q13595* / transformer 2 alpha* / transformer 2 alpha homolog*ENSGALG0000001097368
RBMX / RNA-binding motif protein, X chromosome / P38159* / Q9WV02* / RNA binding motif protein, X-linked*ENSGALG0000000645729
CIRBP / cold inducible RNA binding protein / P60824* / Q14011*ENSGALG0000003091819


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0021796 cerebral cortex regionalization IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0051259 protein complex oligomerization IEA
 biological_processGO:0071333 cellular response to glucose stimulus IEA
 biological_processGO:1990403 embryonic brain development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0036002 pre-mRNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0070717 poly-purine tract binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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