ENSGALG00000006457


Gallus gallus

Features
Gene ID: ENSGALG00000006457
  
Biological name :RBMX
  
Synonyms : RBMX / RNA-binding motif protein, X chromosome
  
Possible biological names infered from orthology : P38159 / Q9WV02 / RNA binding motif protein, X-linked
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 4437445
Gene end: 4448239
  
Corresponding Affymetrix probe sets: GgaAffx.12128.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010414
Ensembl peptide - ENSGALP00000064393
Ensembl peptide - ENSGALP00000062425
Ensembl peptide - ENSGALP00000061373
Ensembl peptide - ENSGALP00000049359
NCBI entrez gene - 422248     See in Manteia.
RefSeq - XM_015278268
RefSeq - NM_001079728
RefSeq - XM_015278266
RefSeq - XM_015278267
RefSeq Peptide - NP_001073196
swissprot - F1NZD3
swissprot - A0A1L1RZU3
swissprot - A0A1L1RUD2
swissprot - A0A1L1RRF1
swissprot - A0A1D5P9F7
Ensembl - ENSGALG00000006457
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbmxENSDARG00000014244Danio rerio
 RBMXENSG00000147274Homo sapiens
 RbmxENSMUSG00000031134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CIRBP / cold inducible RNA binding protein / P60824* / Q14011*ENSGALG0000003091825
TRA2B / transformer 2 beta homolog / P62995* / P62996* / Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA.*ENSGALG0000000653122
TRA2A / transformer-2 protein homolog alpha / Q13595* / transformer 2 alpha* / transformer 2 alpha homolog*ENSGALG0000001097320


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012604  RBM1CTR
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006509 membrane protein ectodomain proteolysis IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051259 protein complex oligomerization IEA
 biological_processGO:0071347 cellular response to interleukin-1 IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005719 nuclear euchromatin IEA
 cellular_componentGO:0044530 supraspliceosomal complex IEA
 cellular_componentGO:0070062 extracellular exosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr