ENSG00000147274


Homo sapiens

Features
Gene ID: ENSG00000147274
  
Biological name :RBMX
  
Synonyms : P38159 / RBMX / RNA binding motif protein, X-linked
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q26.3
Gene start: 136848004
Gene end: 136880764
  
Corresponding Affymetrix probe sets: 1556336_at (Human Genome U133 Plus 2.0 Array)   213762_x_at (Human Genome U133 Plus 2.0 Array)   225310_at (Human Genome U133 Plus 2.0 Array)   229999_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000411989
Ensembl peptide - ENSP00000457051
Ensembl peptide - ENSP00000457691
Ensembl peptide - ENSP00000457866
Ensembl peptide - ENSP00000359645
Ensembl peptide - ENSP00000405117
Ensembl peptide - ENSP00000454777
Ensembl peptide - ENSP00000456048
NCBI entrez gene - 27316     See in Manteia.
OMIM - 300199
RefSeq - NM_001164803
RefSeq - NM_002139
RefSeq Peptide - NP_001158275
RefSeq Peptide - NP_002130
swissprot - P38159
swissprot - H0Y6E7
swissprot - H3BNC1
swissprot - H3BR27
swissprot - H3BT71
swissprot - H3BUY5
Ensembl - ENSG00000147274
  
Related genetic diseases (OMIM): 300238 - ?Mental retardation, X-linked, syndromic 11, Shashi type, 300238
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbmxENSDARG00000014244Danio rerio
 RBMXENSGALG00000006457Gallus gallus
 RbmxENSMUSG00000031134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96E39 / RBMXL1 / RNA binding motif protein, X-linked like 1ENSG0000021351695
O75526 / RBMXL2 / RNA binding motif protein, X-linked like 2ENSG0000017074874
Q15415 / RBMY1F / RNA binding motif protein, Y-linked, family 1, member FENSG0000016980061
Q15415 / RBMY1J / RNA binding motif protein, Y-linked, family 1, member JENSG0000022694161
A6NDE4 / RBMY1B / RNA binding motif protein, Y-linked, family 1, member BENSG0000024287561
P0DJD3 / RBMY1A1 / RNA binding motif protein, Y-linked, family 1, member A1ENSG0000023441461
P0C7P1 / RBMY1D / RNA binding motif protein, Y-linked, family 1, member DENSG0000024439561
A6NEQ0 / RBMY1E / RNA binding motif protein, Y-linked, family 1, member EENSG0000024238961
Q8N7X1 / RBMXL3 / RNA binding motif protein, X-linked like 3ENSG0000017571854
CIRBP / Q14011 / cold inducible RNA binding proteinENSG0000009962228
TRA2B / P62995 / transformer 2 beta homologENSG0000013652722
TRA2A / Q13595 / transformer 2 alpha homologENSG0000016454821
RBM3 / P98179 / RNA binding motif protein 3ENSG0000010231721


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012604  RBM1CTR
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IDA
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0001649 osteoblast differentiation HDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IDA
 biological_processGO:0006376 mRNA splice site selection IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006509 membrane protein ectodomain proteolysis IDA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome ISS
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome ISS
 biological_processGO:0051259 protein complex oligomerization IDA
 biological_processGO:0051260 protein homooligomerization ISS
 biological_processGO:0071347 cellular response to interleukin-1 IDA
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005719 nuclear euchromatin IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0044530 supraspliceosomal complex IDA
 cellular_componentGO:0070062 extracellular exosome IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0001047 core promoter binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0042802 identical protein binding IDA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
Processing of Capped Intron-Containing Pre-mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000053 Macroorchidism "The presence of abnormally large testes." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000336 Prominent supraorbital ridges "Abnormal prominence of the supraorbital ridges, which are bony ridge located above the eye sockets in the area of the eyebrows." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000414 Bulbous nose 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000629 Periorbital fullness 
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 HP:0001328 Learning disability 
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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