ENSG00000099622


Homo sapiens

Features
Gene ID: ENSG00000099622
  
Biological name :CIRBP
  
Synonyms : CIRBP / cold inducible RNA binding protein / Q14011
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.3
Gene start: 1259384
Gene end: 1274880
  
Corresponding Affymetrix probe sets: 200810_s_at (Human Genome U133 Plus 2.0 Array)   200811_at (Human Genome U133 Plus 2.0 Array)   225191_at (Human Genome U133 Plus 2.0 Array)   228519_x_at (Human Genome U133 Plus 2.0 Array)   230142_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000466110
Ensembl peptide - ENSP00000464906
Ensembl peptide - ENSP00000465077
Ensembl peptide - ENSP00000465114
Ensembl peptide - ENSP00000465334
Ensembl peptide - ENSP00000465338
Ensembl peptide - ENSP00000465558
Ensembl peptide - ENSP00000465779
Ensembl peptide - ENSP00000466025
Ensembl peptide - ENSP00000466131
Ensembl peptide - ENSP00000466207
Ensembl peptide - ENSP00000466216
Ensembl peptide - ENSP00000466238
Ensembl peptide - ENSP00000466712
Ensembl peptide - ENSP00000466897
Ensembl peptide - ENSP00000467028
Ensembl peptide - ENSP00000467138
Ensembl peptide - ENSP00000467307
Ensembl peptide - ENSP00000467449
Ensembl peptide - ENSP00000467734
Ensembl peptide - ENSP00000467791
Ensembl peptide - ENSP00000467848
Ensembl peptide - ENSP00000467876
Ensembl peptide - ENSP00000467948
Ensembl peptide - ENSP00000468016
Ensembl peptide - ENSP00000468097
Ensembl peptide - ENSP00000468229
Ensembl peptide - ENSP00000468645
Ensembl peptide - ENSP00000468788
Ensembl peptide - ENSP00000486590
Ensembl peptide - ENSP00000322887
Ensembl peptide - ENSP00000407512
Ensembl peptide - ENSP00000412831
Ensembl peptide - ENSP00000464728
Ensembl peptide - ENSP00000464830
NCBI entrez gene - 1153     See in Manteia.
OMIM - 602649
RefSeq - NM_001300829
RefSeq - XM_006722637
RefSeq - XM_011527668
RefSeq - XM_017026237
RefSeq - NM_001280
RefSeq - NM_001300815
RefSeq Peptide - NP_001271
RefSeq Peptide - NP_001287744
RefSeq Peptide - NP_001287758
swissprot - K7EIF7
swissprot - K7EJV1
swissprot - K7EJV5
swissprot - K7ELL4
swissprot - K7ELT6
swissprot - K7ELV6
swissprot - K7EMY9
swissprot - K7ENN6
swissprot - K7ENX8
swissprot - K7EPM4
swissprot - K7EQL0
swissprot - K7EQR7
swissprot - Q14011
swissprot - Q53XX5
swissprot - K7ER40
swissprot - K7EQX4
swissprot - D6W5Y5
swissprot - F6WMK9
Ensembl - ENSG00000099622
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cirbpaENSDARG00000103672Danio rerio
 cirbpbENSDARG00000013351Danio rerio
 CIRBPENSGALG00000030918Gallus gallus
 CirbpENSMUSG00000045193Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBMX / P38159 / RNA binding motif protein, X-linkedENSG0000014727436
Q96E39 / RBMXL1 / RNA binding motif protein, X-linked like 1ENSG0000021351635
RBM3 / P98179 / RNA binding motif protein 3ENSG0000010231732
O75526 / RBMXL2 / RNA binding motif protein, X-linked like 2ENSG0000017074831
P0DJD3 / RBMY1A1 / RNA binding motif protein, Y-linked, family 1, member A1ENSG0000023441430
A6NDE4 / RBMY1B / RNA binding motif protein, Y-linked, family 1, member BENSG0000024287530
P0C7P1 / RBMY1D / RNA binding motif protein, Y-linked, family 1, member DENSG0000024439530
Q15415 / RBMY1F / RNA binding motif protein, Y-linked, family 1, member FENSG0000016980029
Q15415 / RBMY1J / RNA binding motif protein, Y-linked, family 1, member JENSG0000022694129
A6NEQ0 / RBMY1E / RNA binding motif protein, Y-linked, family 1, member EENSG0000024238929
Q8N7X1 / RBMXL3 / RNA binding motif protein, X-linked like 3ENSG0000017571827
TRA2B / P62995 / transformer 2 beta homologENSG0000013652721
TRA2A / Q13595 / transformer 2 alpha homologENSG0000016454820


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR034278  RBM3/CIRBP, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009409 response to cold TAS
 biological_processGO:0009411 response to UV IDA
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0034063 stress granule assembly ISS
 biological_processGO:0045727 positive regulation of translation IDA
 biological_processGO:0048255 mRNA stabilization IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0010494 cytoplasmic stress granule ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030371 translation repressor activity ISS
 molecular_functionGO:0070181 small ribosomal subunit rRNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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