ENSMUSG00000032777


Mus musculus

Features
Gene ID: ENSMUSG00000032777
  
Biological name :Gtf3c1
  
Synonyms : Gtf3c1 / Q8K284 / ral transcription factor 3C polypeptide 1
  
Possible biological names infered from orthology : general transcription factor IIIC subunit 1 / Q12789
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: F3
Gene start: 125640954
Gene end: 125707780
  
Corresponding Affymetrix probe sets: 10567750 (MoGene1.0st)   1434066_at (Mouse Genome 430 2.0 Array)   1438425_at (Mouse Genome 430 2.0 Array)   1456024_at (Mouse Genome 430 2.0 Array)   1459673_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000056719
Ensembl peptide - ENSMUSP00000146022
Ensembl peptide - ENSMUSP00000145939
Ensembl peptide - ENSMUSP00000145856
Ensembl peptide - ENSMUSP00000145711
Ensembl peptide - ENSMUSP00000145607
NCBI entrez gene - 233863     See in Manteia.
MGI - MGI:107887
RefSeq - NM_207239
RefSeq Peptide - NP_997122
swissprot - A0A0U1RNV0
swissprot - A0A0U1RNK8
swissprot - A0A0U1RPK9
swissprot - Q8K284
swissprot - A0A0U1RPD8
swissprot - A0A0U1RP70
Ensembl - ENSMUSG00000032777
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01083166.1ENSDARG00000099619Danio rerio
 GTF3C1ENSGALG00000007387Gallus gallus
 GTF3C1ENSG00000077235Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007309  B-block binding subunit of TFIIIC
 IPR035625  Tfc3, extended winged-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006359 regulation of transcription by RNA polymerase III IEA
 biological_processGO:0006384 transcription initiation from RNA polymerase III promoter IBA
 biological_processGO:0009304 tRNA transcription IBA
 biological_processGO:0042791 5S class rRNA transcription by RNA polymerase III IBA
 cellular_componentGO:0000127 transcription factor TFIIIC complex IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000995 RNA polymerase III general transcription initiation factor activity IBA
 molecular_functionGO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001007 obsolete transcription factor activity, RNA polymerase III transcription factor binding IBA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0006204 embryonic lethality before implantation "death anytime after fertilization but before implantation (E0 to less than E4.5)" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Ehmt1Tg(Tyr)2265COve/Ehmt1Tg(Tyr)2265COve
Genetic Background: FVB/N-Ehmt1Tg(Tyr)2265COve

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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