ENSMUSG00000033732


Mus musculus

Features
Gene ID: ENSMUSG00000033732
  
Biological name :Sf3b3
  
Synonyms : Q921M3 / Sf3b3 / splicing factor 3b, subunit 3
  
Possible biological names infered from orthology : Q15393
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: E1
Gene start: 110810239
Gene end: 110846787
  
Corresponding Affymetrix probe sets: 10581674 (MoGene1.0st)   1415985_at (Mouse Genome 430 2.0 Array)   1430075_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000045073
NCBI entrez gene - 101943     See in Manteia.
MGI - MGI:1289341
RefSeq - XM_017312494
RefSeq - NM_133953
RefSeq - XM_006530518
RefSeq - XM_006530520
RefSeq Peptide - NP_598714
swissprot - B2RSV4
swissprot - Q921M3
Ensembl - ENSMUSG00000033732
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b3ENSDARG00000103553Danio rerio
 ENSGALG00000002531Gallus gallus
 SF3B3ENSG00000189091Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ddb1 / Q3U1J4 / DNA damage-binding protein 1 / Q16531* / damage specific DNA binding protein 1*ENSMUSG0000002474022


Protein motifs (from Interpro)
Interpro ID Name
 IPR004871  Cleavage/polyadenylation specificity factor, A subunit, C-terminal
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0042177 negative regulation of protein catabolic process IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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