ENSG00000189091


Homo sapiens

Features
Gene ID: ENSG00000189091
  
Biological name :SF3B3
  
Synonyms : Q15393 / SF3B3 / splicing factor 3b subunit 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q22.1
Gene start: 70523788
Gene end: 70577670
  
Corresponding Affymetrix probe sets: 200687_s_at (Human Genome U133 Plus 2.0 Array)   200688_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463359
Ensembl peptide - ENSP00000464126
Ensembl peptide - ENSP00000305790
Ensembl peptide - ENSP00000454308
Ensembl peptide - ENSP00000461236
Ensembl peptide - ENSP00000461342
Ensembl peptide - ENSP00000463253
NCBI entrez gene - 23450     See in Manteia.
OMIM - 605592
RefSeq - NM_012426
RefSeq Peptide - NP_036558
swissprot - J3QKV4
swissprot - J3QL37
swissprot - J3QRB2
swissprot - Q15393
swissprot - H3BMB0
swissprot - I3L4G7
Ensembl - ENSG00000189091
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b3ENSDARG00000103553Danio rerio
 ENSGALG00000002531Gallus gallus
 Sf3b3ENSMUSG00000033732Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDB1 / Q16531 / damage specific DNA binding protein 1ENSG0000016798622


Protein motifs (from Interpro)
Interpro ID Name
 IPR004871  Cleavage/polyadenylation specificity factor, A subunit, C-terminal
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions TAS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0042177 negative regulation of protein catabolic process IDA
 biological_processGO:0065003 protein-containing complex assembly TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex TAS
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex TAS
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr