ENSGALG00000002531


Gallus gallus

Features
Gene ID: ENSGALG00000002531
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Q15393 / Q921M3 / SF3B3 / splicing factor 3b subunit 3
  
Species: Gallus gallus
  
Chr. number: 11
Strand: -1
Band:
Gene start: 1780997
Gene end: 1810428
  
Corresponding Affymetrix probe sets: Gga.1318.1.S1_s_at (Chicken Array)   GgaAffx.11447.1.S1_s_at (Chicken Array)   GgaAffx.13033.1.S1_at (Chicken Array)   GgaAffx.25526.2.S1_at (Chicken Array)   GgaAffx.25526.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000003978
Ensembl peptide - ENSGALP00000060929
Ensembl peptide - ENSGALP00000059736
NCBI entrez gene - 415680     See in Manteia.
RefSeq - XM_001232347
RefSeq - XM_004944119
RefSeq - XM_015279214
swissprot - A0A1L1RQ53
swissprot - A0A1L1RLV8
swissprot - A0A1D6UPS9
Ensembl - ENSGALG00000002531
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b3ENSDARG00000103553Danio rerio
 SF3B3ENSG00000189091Homo sapiens
 Sf3b3ENSMUSG00000033732Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDB1 / Q805F9 / DNA damage-binding protein 1 / Q16531* / Q3U1J4* / damage specific DNA binding protein 1*ENSGALG0000004233322


Protein motifs (from Interpro)
Interpro ID Name
 IPR004871  Cleavage/polyadenylation specificity factor, A subunit, C-terminal
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr