ENSDARG00000103553


Danio rerio

Features
Gene ID: ENSDARG00000103553
  
Biological name :sf3b3
  
Synonyms : Q1LVE8 / sf3b3 / splicing factor 3b, subunit 3
  
Possible biological names infered from orthology : Q15393 / Q921M3
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 18547023
Gene end: 18587745
  
Corresponding Affymetrix probe sets: Dr.5378.1.S1_at (Zebrafish Array)   NM_213503_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134109
Ensembl peptide - ENSDARP00000153577
NCBI entrez gene - 406824     See in Manteia.
RefSeq - NM_213503
RefSeq Peptide - NP_998668
swissprot - Q1LVE8
ZFIN ID - ZDB-GENE-040426-2901
Ensembl - ENSDARG00000103553
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000002531Gallus gallus
 SF3B3ENSG00000189091Homo sapiens
 Sf3b3ENSMUSG00000033732Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddb1 / damage-specific DNA binding protein 1 / Q16531*ENSDARG0000007443121


Protein motifs (from Interpro)
Interpro ID Name
 IPR004871  Cleavage/polyadenylation specificity factor, A subunit, C-terminal
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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