ENSMUSG00000035560


Mus musculus

Features
Gene ID: ENSMUSG00000035560
  
Biological name :Wdr20rt
  
Synonyms : Q9D5R2 / Wdr20rt / WD repeat domain 20, retrogene
  
Possible biological names infered from orthology : Q8TBZ3 / WDR20 / WD repeat domain 20
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: C1
Gene start: 65225517
Gene end: 65233359
  
Corresponding Affymetrix probe sets: 10396055 (MoGene1.0st)   1430004_s_at (Mouse Genome 430 2.0 Array)   1453693_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000036682
Ensembl peptide - ENSMUSP00000152626
Ensembl peptide - ENSMUSP00000152487
Ensembl peptide - ENSMUSP00000152408
NCBI entrez gene - 70948     See in Manteia.
MGI - MGI:1918198
RefSeq - NM_027614
RefSeq Peptide - NP_081890
swissprot - A0A1Y7VLC8
swissprot - A0A1Y7VJI5
swissprot - A0A1Y7VMB5
swissprot - Q9D5R2
Ensembl - ENSMUSG00000035560
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wdr20aENSDARG00000079220Danio rerio
 wdr20bENSDARG00000041239Danio rerio
 WDR20ENSGALG00000011365Gallus gallus
 WDR20ENSG00000140153Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Wdr20 / WD repeat domain 20 / Q8TBZ3*ENSMUSG0000003795794
Dmwd / Q08274 / Dystrophia myotonica WD repeat-containing protein / Q09019* / DM1 locus, WD repeat containing*ENSMUSG0000003041056


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016579 protein deubiquitination IBA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr