ENSDARG00000041239


Danio rerio

Features
Gene ID: ENSDARG00000041239
  
Biological name :wdr20b
  
Synonyms : wdr20b / WD repeat domain 20b
  
Possible biological names infered from orthology : Q8TBZ3 / Q9D5R2 / WDR20 / Wdr20rt / WD repeat domain 20 / WD repeat domain 20, retrogene
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 54036981
Gene end: 54051196
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000060454
Ensembl peptide - ENSDARP00000122610
NCBI entrez gene - 100535470     See in Manteia.
RefSeq - XM_003200785
swissprot - F1Q5J5
swissprot - Q5RG10
ZFIN ID - ZDB-GENE-041014-234
Ensembl - ENSDARG00000041239
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WDR20ENSGALG00000011365Gallus gallus
 WDR20ENSG00000140153Homo sapiens
 Q9D5R2ENSMUSG00000035560Mus musculus
 Wdr20ENSMUSG00000037957Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
wdr20a / WD repeat domain 20a / WDR20* / Q8TBZ3* / WD repeat domain 20*ENSDARG0000007922072
DMWD / zmp:0000000529 / Q09019* / DM1 locus, WD repeat containing*ENSDARG0000000658556


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016579 protein deubiquitination IBA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000038543 wdr48b / Q6PFM9 / WD repeat domain 48b / WDR48* / Q8TAF3* / Q8BH57* / WD repeat domain 48*  / complex
 ENSDARG00000067976 ar / androgen receptor / P10275* / P19091*  / complex
 ENSDARG00000078109 A4FUN7 / usp12a / ubiquitin specific peptidase 12a / USP12* / Q9D9M2* / O75317* / ubiquitin specific peptidase 12*  / complex






 

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contact: otassy@igbmc.fr