ENSDARG00000038543


Danio rerio

Features
Gene ID: ENSDARG00000038543
  
Biological name :wdr48b
  
Synonyms : Q6PFM9 / wdr48b / WD repeat domain 48b
  
Possible biological names infered from orthology : Q8BH57 / Q8TAF3 / WDR48 / WD repeat domain 48
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 49805892
Gene end: 49834052
  
Corresponding Affymetrix probe sets: Dr.5219.1.A1_at (Zebrafish Array)   NM_214709_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000056247
NCBI entrez gene - 334682     See in Manteia.
RefSeq - XM_005168423
RefSeq - NM_214709
RefSeq - XM_005168422
RefSeq Peptide - NP_999874
swissprot - Q6PFM9
ZFIN ID - ZDB-GENE-030131-6622
Ensembl - ENSDARG00000038543
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WDR48ENSGALG00000006052Gallus gallus
 WDR48ENSG00000114742Homo sapiens
 Wdr48ENSMUSG00000032512Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
wdr48a / WD repeat domain 48a / WDR48* / Q8TAF3* / WD repeat domain 48*ENSDARG0000010273469


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR021772  Protein of unknown function DUF3337


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016579 protein deubiquitination ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Recognition of DNA damage by PCNA-containing replication complex
Ub-specific processing proteases
Fanconi Anemia Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000003938 rpa1 / Q6NY74 / replication protein A1 / Q8VEE4* / P27694* / Replication protein A 70 kDa DNA-binding subunit *  / complex / reaction
 ENSDARG00000037188 rpa2 / replication protein A2 / RPA4* / Q13156* / P15927* / replication protein A4*  / reaction / complex
 ENSDARG00000054155 pcna / Q9PTP1 / proliferating cell nuclear antigen / P17918* / P12004* / Pcna-ps2*  / complex / reaction
 ENSDARG00000078109 A4FUN7 / usp12a / ubiquitin specific peptidase 12a / USP12* / Q9D9M2* / O75317* / ubiquitin specific peptidase 12*  / complex
 ENSDARG00000041239 wdr20b / WD repeat domain 20b / WDR20* / Q8TBZ3* / Q9D5R2* / Wdr20rt* / WD repeat domain 20* / WD repeat domain 20, retrogene*  / complex
 ENSDARG00000053574 fancd2 / Fanconi anemia, complementation group D2 / Q80V62* / Q9BXW9* / Fanconi anemia group D2 protein homolog *  / reaction
 ENSDARG00000026224 fanci / Fanconi anemia, complementation group I / Q8K368* / Q9NVI1* / Fanconi anemia group I protein homolog *  / reaction
 ENSDARG00000067976 ar / androgen receptor / P10275* / P19091*  / complex






 

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