ENSGALG00000006052


Gallus gallus

Features
Gene ID: ENSGALG00000006052
  
Biological name :WDR48
  
Synonyms : Q5F3K4 / WDR48 / WD repeat-containing protein 48
  
Possible biological names infered from orthology : Q8BH57 / Q8TAF3 / WD repeat domain 48
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 5312695
Gene end: 5336291
  
Corresponding Affymetrix probe sets: Gga.3234.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049264
Ensembl peptide - ENSGALP00000030646
NCBI entrez gene - 420427     See in Manteia.
RefSeq - NM_001030964
RefSeq Peptide - NP_001026135
swissprot - Q5F3K4
swissprot - A0A1D5P963
Ensembl - ENSGALG00000006052
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q6PFM9ENSDARG00000038543Danio rerio
 wdr48aENSDARG00000102734Danio rerio
 WDR48ENSG00000114742Homo sapiens
 Wdr48ENSMUSG00000032512Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR021772  Protein of unknown function DUF3337


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000724 double-strand break repair via homologous recombination IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007338 single fertilization IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0048568 embryonic organ development IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0048872 homeostasis of number of cells IEA
 biological_processGO:0050679 positive regulation of epithelial cell proliferation IEA
 biological_processGO:0072520 seminiferous tubule development IEA
 biological_processGO:1902525 regulation of protein monoubiquitination IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA


Pathways (from Reactome)
Pathway description
Recognition of DNA damage by PCNA-containing replication complex
Ub-specific processing proteases
Fanconi Anemia Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000000734 RPA2 / RPA4* / Q13156* / P15927* / replication protein A2* / replication protein A4*  / complex / reaction
 ENSGALG00000003072 RPA1 / Q5ZJJ2 / Replication protein A 70 kDa DNA-binding subunit / Q8VEE4* / P27694* / replication protein A1*  / complex / reaction
 ENSGALG00000034708 USP12 / ubiquitin specific peptidase 12 / O75317* / Q9D9M2*  / complex
 ENSGALG00000010957 USP1 / ubiquitin carboxyl-terminal hydrolase 1 / O94782* / Q8BJQ2* / ubiquitin specific peptidase 1*  / complex
 ENSGALG00000003720 FANCD2 / Fanconi anemia complementation group D2 / Q80V62* / Q9BXW9* / Fanconi anemia group D2 protein homolog *  / reaction
 ENSGALG00000036790 P79781 / RPS27A / Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a / P62983* / P62979* / AL136454.1* / ribosomal protein S27a*  / reaction / complex
 ENSGALG00000037716 UBA52 / ubiquitin A-52 residue ribosomal protein fusion product 1 / P62984* / P62987* / Gm5239* / Gm11808* / predicted gene 11808*  / reaction / complex
 ENSGALG00000010700 RPA3 / replication protein A3 / P35244* / Q9CQ71* / Replication protein A 14 kDa subunit *  / reaction / complex
 ENSGALG00000029292 PCNA / Q9DEA3 / Proliferating cell nuclear antigen / P17918* / P12004* / Pcna-ps2*  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr