ENSDARG00000078109


Danio rerio

Features
Gene ID: ENSDARG00000078109
  
Biological name :usp12a
  
Synonyms : A4FUN7 / ubiquitin specific peptidase 12a / usp12a
  
Possible biological names infered from orthology : O75317 / Q9D9M2 / ubiquitin specific peptidase 12 / USP12
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 21600320
Gene end: 21620316
  
Corresponding Affymetrix probe sets: Dr.5972.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000103890
NCBI entrez gene - 565736     See in Manteia.
RefSeq - NM_001083556
RefSeq Peptide - NP_001077025
swissprot - A4FUN7
ZFIN ID - ZDB-GENE-060228-3
Ensembl - ENSDARG00000078109
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP12ENSGALG00000034708Gallus gallus
 USP12ENSG00000152484Homo sapiens
 Usp12ENSMUSG00000029640Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
usp12b / ubiquitin specific peptidase 12bENSDARG0000007436788
usp46 / A5WWB0 / ubiquitin specific peptidase 46 / P62068* / P62069*ENSDARG0000004534384
usp38 / ubiquitin specific peptidase 38 / Q8BW70* / Q8NB14*ENSDARG0000007579830


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination ISS
 molecular_functionGO:0004197 cysteine-type endopeptidase activity ISS
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity ISS
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000038543 wdr48b / Q6PFM9 / WD repeat domain 48b / WDR48* / Q8TAF3* / Q8BH57* / WD repeat domain 48*  / complex
 ENSDARG00000067976 ar / androgen receptor / P10275* / P19091*  / complex
 ENSDARG00000041239 wdr20b / WD repeat domain 20b / WDR20* / Q8TBZ3* / Q9D5R2* / Wdr20rt* / WD repeat domain 20* / WD repeat domain 20, retrogene*  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr