ENSMUSG00000035898


Mus musculus

Features
Gene ID: ENSMUSG00000035898
  
Biological name :Uba6
  
Synonyms : Q8C7R4 / Uba6 / ubiquitin-like modifier activating enzyme 6
  
Possible biological names infered from orthology : A0AVT1
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: E1
Gene start: 86109287
Gene end: 86172803
  
Corresponding Affymetrix probe sets: 10530910 (MoGene1.0st)   1428944_at (Mouse Genome 430 2.0 Array)   1428945_at (Mouse Genome 430 2.0 Array)   1428946_at (Mouse Genome 430 2.0 Array)   1439302_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000109000
Ensembl peptide - ENSMUSP00000035328
NCBI entrez gene - 231380     See in Manteia.
MGI - MGI:1913894
RefSeq - NM_172712
RefSeq Peptide - NP_766300
swissprot - D3Z061
swissprot - Q8C7R4
Ensembl - ENSMUSG00000035898
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:dkey-82j4.2ENSDARG00000080019Danio rerio
 UBA6ENSGALG00000011762Gallus gallus
 UBA6ENSG00000033178Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Uba1 / Q02053 / ubiquitin-like modifier activating enzyme 1 / P22314*ENSMUSG0000000192441
Uba1y / P31254 / ubiquitin-activating enzyme, Chr YENSMUSG0000006905341
Uba7 / ubiquitin-like modifier activating enzyme 7 / P41226*ENSMUSG0000003259633


Protein motifs (from Interpro)
Interpro ID Name
 IPR000011  Ubiquitin/SUMO-activating enzyme E1
 IPR000594  THIF-type NAD/FAD binding fold
 IPR018075  Ubiquitin-activating enzyme E1
 IPR018965  Ubiquitin-activating enzyme E1, C-terminal
 IPR019572  Ubiquitin-activating enzyme, catalytic cysteine domain
 IPR032418  Ubiquitin-activating enzyme E1, FCCH domain
 IPR032420  Ubiquitin-activating enzyme E1, four-helix bundle
 IPR035985  Ubiquitin-activating enzyme


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006464 cellular protein modification process IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IBA
 biological_processGO:0007612 learning IMP
 biological_processGO:0007626 locomotory behavior IMP
 biological_processGO:0016567 protein ubiquitination ISO
 biological_processGO:0021764 amygdala development IMP
 biological_processGO:0021766 hippocampus development IMP
 biological_processGO:0060996 dendritic spine development IMP
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004839 ubiquitin activating enzyme activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008641 ubiquitin-like modifier activating enzyme activity IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0019780 FAT10 activating enzyme activity IMP


Pathways (from Reactome)
Pathway description
Synthesis of active ubiquitin: roles of E1 and E2 enzymes
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000774 reduced brain size "smaller appearance of the brain" [J:35802]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0000807 abnormal hippocampus morphology "absent or malformed deep lying structure of the cerebrum involved with memory storage and spatial navigation" [The Atlas of Mouse Development:ISBN 0-12-402035-6, MGI:Cls, J:38857]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0000818 abnormal amygdala morphology "any malformation or absence of the almond-shaped body of basal nuclei anterior to the inferior horn of the lateral ventricle of the brain, within the temporal lobe; this area is involved in aggression and fear responses" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0001258 decreased body length "decreased crown to tail distance compared to controls" [cwg:Carroll W. Goldsmith, Mouse Genome Informatics Curator]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0001262 decreased body weight "lower than normal average weight " [J:61295]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0001360 abnormal social investigation "altered behavior of animals to approach and examine other animals" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0001399 hyperactivity "general restlessness or excessive movement; more frequent movement from one place to another" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409, J:57125]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0001438 aphagia "inability to eat " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:30404]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0001447 abnormal nest building behavior "deviation from the usual behavior of mice to build sleeping nests out of any available materials; also of female mice to bulid nests to protect offspring" [J:42758, What s wrong with my mouse?:ISBN 0-471-31639-3]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0001488 increased startle reflex "reduced threshold or more severe reflex response to variable stimuli, often auditory; usually measured by amplitude of whole body flinch" [What s Wrong With My Mouse?:ISBN 0-471-31639-3, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0001492 piloerection "the involuntary bristling of hairs" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0002083 premature death "death after 3 weeks of age, but before normal life span" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Gt(ROSA)26Sortm10(Gata2)Jhai/Gt(ROSA)26Sor+,Edil3Tg(Sox2-cre)1Amc/Edil3+
Genetic Background: involves: 129S6/SvEvTac * C57BL/6 * C57BL/6NCr * CBA

 MP:0002797 thigmotaxis "preference of a mouse for the side walls of a cage or box; usually an indicator of increased anxiety response" [J:56814]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0003360 depression-related behavior 
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0003858 enhanced coordination "improved ability to execute integrated movements of muscle" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0004889 increased energy expenditure "increase in the number of calories used per unit time or decrease in weight gain for a given amount of food eaten" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0005266 abnormal metabolism "anomalous chemical and physical changes occurring in tissue " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0005289 increased oxygen consumption "greater than the normal rate at which oxygen enters the blood from alveolar gas; this is equal in the steady state to the consumption of oxygen by tissue metabolism throughout the body" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0008267 abnormal hippocampus CA3 region morphology 
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0008428 abnormal spatial working memory "anomaly in the ability to spontaneously process spatial location information in order to naviagate or perform other behavior using such locational cues, without previous encounters or training at that location" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0008948 decreased neuron number "fewer than normal numbers of the cells of the nervous system that receive, conduct, and transmit impulses" [MESH:A08.663]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0008963 increased carbon dioxide production "increase in the rate at which carbon dioxide leaves the blood and enters the alveolar gas" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0009142 decreased prepulse inhibition "decrease in the ability of a relatively mild stimulus to suppress the response to a strong, startle-eliciting stimulus" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0009454 impaired contextual conditioning "decrease in the ability of an animal to learn and remember an association between an aversive experience (the unconditioned stimulus (US), usually a shock) and the neutral, unchanging environment (the conditioned stimulus (CS), or the environmental context in this case)" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0009674 decreased birth weight "reduction in average weight at birth compared to controls" [RGD:cur "Rat Genome Database submission"]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0009936 abnormal dendritic spine morphology "any structural anomaly of the small membranous protrusion from the dendrite of a neuron that is involved in synaptic transmission; it typically receives input from a single synapse of an axon" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0010053 decreased grip strength "reduced ability to grasp and hold objects, often measured as time spent hanging from an object or wire" [ISBN:0471316393 "Crawley, JN, What s Wrong with my Mouse: Behavioral Phenotyping of Transgenic and Knockout Mice"]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0011086 partial postnatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms anytime between the neonatal period and weaning age (Mus: P1 to approximately 3 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

 MP:0011092 complete embryonic lethality "death of all organisms of a given genotype in a population within the embryonic period prior to organogenesis (Mus: prior to E14)" [MGI:csmith]
Show

Allelic Composition: Ifnar1tm1Agt/Ifnar1tm1Agt
Genetic Background: involves: 129S2/SvPas * 129S6/SvEvTac

 MP:0011620 abnormal habituation to a new environment "anomaly in the process in which there is a progressive decline of behavioral response probability with an exposure to a new environment" [MGI:csmith]
Show

Allelic Composition: Tg(Camk2a-tTA)1Mmay/0,Fgf14Tg(tetO-MAPT*P301L)4510Kha/Fgf14+
Genetic Background: involves: FVB/N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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