ENSMUSG00000038046


Mus musculus

Features
Gene ID: ENSMUSG00000038046
  
Biological name :Mrm3
  
Synonyms : Mrm3 / Q5ND52 / rRNA methyltransferase 3, mitochondrial
  
Possible biological names infered from orthology : mitochondrial rRNA methyltransferase 3 / Q9HC36
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B5
Gene start: 76243715
Gene end: 76250619
  
Corresponding Affymetrix probe sets: 10378768 (MoGene1.0st)   1428766_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000042882
NCBI entrez gene - 67390     See in Manteia.
MGI - MGI:1914640
RefSeq - NM_183263
RefSeq - XM_006533991
RefSeq Peptide - NP_899086
swissprot - Q5ND52
Ensembl - ENSMUSG00000038046
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mrm3aENSDARG00000016543Danio rerio
 mrm3bENSDARG00000069082Danio rerio
 MRM3ENSGALG00000004799Gallus gallus
 MRM3ENSG00000171861Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001537  tRNA/rRNA methyltransferase, SpoU type
 IPR013123  RNA 2-O ribose methyltransferase, substrate binding
 IPR029026  tRNA (guanine-N1-)-methyltransferase, N-terminal
 IPR029028  Alpha/beta knot methyltransferases
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000451 rRNA 2"-O-methylation IEA
 biological_processGO:0001510 RNA methylation IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005739 mitochondrion ISO
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008173 RNA methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0070039 rRNA (guanosine-2"-O-)-methyltransferase activity ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Rnf10tm1b(KOMP)Wtsi/Rnf10tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Rnf10tm1b(KOMP)Wtsi/Ucd

 MP:0013292 embryonic lethality prior to organogenesis "death prior to the completion of embryo turning (Mus: E9-9.5)" [MGI:smb]
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Allelic Composition: Rnf10tm1b(KOMP)Wtsi/Rnf10tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Rnf10tm1b(KOMP)Wtsi/Ucd

 MP:0013293 embryonic lethality prior to tooth bud stage "death prior to the appearance of tooth buds (Mus: E12-E12.5)" [MGI:smb]
Show

Allelic Composition: Rnf10tm1b(KOMP)Wtsi/Rnf10tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Rnf10tm1b(KOMP)Wtsi/Ucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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