ENSMUSG00000038954


Mus musculus

Features
Gene ID: ENSMUSG00000038954
  
Biological name :Supt3
  
Synonyms : SPT3 homolog, SAGA and STAGA complex component / Supt3
  
Possible biological names infered from orthology : O75486 / SUPT3H
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: B3
Gene start: 44777152
Gene end: 45119290
  
Corresponding Affymetrix probe sets: 10445360 (MoGene1.0st)   1434963_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000121148
Ensembl peptide - ENSMUSP00000050783
Ensembl peptide - ENSMUSP00000120197
NCBI entrez gene - 109115     See in Manteia.
MGI - MGI:1923723
RefSeq - XM_006523480
RefSeq - XM_006523476
RefSeq - XM_006523477
RefSeq - XM_006523478
RefSeq - XM_006523479
RefSeq - NM_178652
RefSeq - XM_006523474
RefSeq - XM_006523475
RefSeq Peptide - NP_848767
swissprot - B0QZW5
swissprot - B0QZW4
swissprot - Q8BVY4
Ensembl - ENSMUSG00000038954
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 supt3hENSDARG00000098141Danio rerio
 SUPT3HENSGALG00000016705Gallus gallus
 O75486ENSG00000196284Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003195  Transcription initiation factor IID, subunit 13
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0016573 histone acetylation IBA
 biological_processGO:0016578 histone deubiquitination ISO
 biological_processGO:0043966 histone H3 acetylation ISO
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0000124 SAGA complex IBA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0030914 STAGA complex ISO
 cellular_componentGO:0033276 transcription factor TFTC complex ISO
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0003712 transcription coregulator activity IBA
 molecular_functionGO:0003713 transcription coactivator activity ISO
 molecular_functionGO:0004402 histone acetyltransferase activity ISO
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Sufutm1b(KOMP)Wtsi/Sufutm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Sufutm1b(KOMP)Wtsi/Ucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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