ENSMUSG00000047213


Mus musculus

Features
Gene ID: ENSMUSG00000047213
  
Biological name :Ythdf3
  
Synonyms : Q8BYK6 / Ythdf3 / YTH domain family 3
  
Possible biological names infered from orthology : Q7Z739 / YTH N6-methyladenosine RNA binding protein 3
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: A1
Gene start: 16183212
Gene end: 16217037
  
Corresponding Affymetrix probe sets: 10490931 (MoGene1.0st)   1426840_at (Mouse Genome 430 2.0 Array)   1426841_at (Mouse Genome 430 2.0 Array)   1426842_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000103982
Ensembl peptide - ENSMUSP00000103983
Ensembl peptide - ENSMUSP00000141610
NCBI entrez gene - 229096     See in Manteia.
MGI - MGI:1918850
RefSeq - XM_006535444
RefSeq - NM_001145919
RefSeq - NM_001358042
RefSeq - NM_001358043
RefSeq - NM_172677
RefSeq - XM_006535442
RefSeq - XM_006535443
RefSeq Peptide - NP_001344972
RefSeq Peptide - NP_766265
RefSeq Peptide - NP_001139391
RefSeq Peptide - NP_001344970
RefSeq Peptide - NP_001344971
swissprot - Q8BYK6
Ensembl - ENSMUSG00000047213
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ythdf3ENSDARG00000057939Danio rerio
 YTHDF3ENSGALG00000039774Gallus gallus
 Q7Z739ENSG00000185728Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P59326 / Ythdf1 / YTH domain family 1 / Q9BYJ9* / YTH N6-methyladenosine RNA binding protein 1*ENSMUSG0000003884866
Q91YT7 / Ythdf2 / YTH domain family 2 / Q9Y5A9* / YTH N6-methyladenosine RNA binding protein 2*ENSMUSG0000004002565


Protein motifs (from Interpro)
Interpro ID Name
 IPR007275  YTH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045727 positive regulation of translation ISO
 biological_processGO:0045948 positive regulation of translational initiation ISO
 biological_processGO:0061157 mRNA destabilization ISO
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043022 ribosome binding ISO
 molecular_functionGO:1990247 N6-methyladenosine-containing RNA binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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