ENSMUSG00000054272


Mus musculus

Features
Gene ID: ENSMUSG00000054272
  
Biological name :Zscan4c
  
Synonyms : Q80VJ6 / zinc finger and SCAN domain containing 4C / Zscan4c
  
Possible biological names infered from orthology : Q8NAM6 / zinc finger and SCAN domain containing 4 / ZSCAN4
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A1
Gene start: 11005745
Gene end: 11010547
  
Corresponding Affymetrix probe sets: 10549964 (MoGene1.0st)   10549972 (MoGene1.0st)   10559978 (MoGene1.0st)   1457033_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000118506
NCBI entrez gene - 245109     See in Manteia.
MGI - MGI:2685243
RefSeq - NM_001013765
RefSeq Peptide - NP_001013787
swissprot - Q80VJ6
Ensembl - ENSMUSG00000054272
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q8NAM6ENSG00000180532Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Zscan4-ps2 / zinc finger and SCAN domain containing 4, pseudogene 2 / Q8NAM6* / ZSCAN4* / zinc finger and SCAN domain containing 4*ENSMUSG0000011019099
Q3URS2 / Zscan4f / zinc finger and SCAN domain containing 4F / Q8NAM6* / ZSCAN4* / zinc finger and SCAN domain containing 4*ENSMUSG0000007082899
Zscan4-ps3 / zinc finger and SCAN domain containing 4, pseudogene 3 / Q8NAM6* / ZSCAN4* / zinc finger and SCAN domain containing 4*ENSMUSG0000010996998
A7KBS4 / Zscan4d / zinc finger and SCAN domain containing 4D / Q8NAM6* / ZSCAN4* / zinc finger and SCAN domain containing 4*ENSMUSG0000009071495
Zscan4e / zinc finger and SCAN domain containing 4E / Q8NAM6* / ZSCAN4* / zinc finger and SCAN domain containing 4*ENSMUSG0000009593695
Zscan4b / zinc finger and SCAN domain containing 4B / Q8NAM6* / ZSCAN4* / zinc finger and SCAN domain containing 4*ENSMUSG0000009533995
Zscan4-ps1 / zinc finger and SCAN domain containing 4, pseudogene 1 / Q8NAM6* / ZSCAN4* / zinc finger and SCAN domain containing 4*ENSMUSG0000011010395


Protein motifs (from Interpro)
Interpro ID Name
 IPR003309  SCAN domain
 IPR008916  Retrovirus capsid, C-terminal
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IDA
 biological_processGO:0010833 telomere maintenance via telomere lengthening IDA
 biological_processGO:0045950 negative regulation of mitotic recombination IMP
 biological_processGO:0048863 stem cell differentiation TAS
 cellular_componentGO:0000781 chromosome, telomeric region IDA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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