ENSMUSG00000054517


Mus musculus

Features
Gene ID: ENSMUSG00000054517
  
Biological name :Trim65
  
Synonyms : Q8BFW4 / Trim65 / Tripartite motif-containing protein 65
  
Possible biological names infered from orthology : Q6PJ69 / tripartite motif containing 65
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: E2
Gene start: 116121846
Gene end: 116131128
  
Corresponding Affymetrix probe sets: 10393113 (MoGene1.0st)   1442004_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000063410
Ensembl peptide - ENSMUSP00000102048
NCBI entrez gene - 338364     See in Manteia.
MGI - MGI:2442815
RefSeq - XM_017314619
RefSeq - NM_178802
RefSeq Peptide - NP_848917
swissprot - Q8BFW4
Ensembl - ENSMUSG00000054517
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim65ENSDARG00000077098Danio rerio
 Q6PJ69ENSG00000141569Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Trim80 / tripartite motif-containing 80ENSMUSG0000007033226
Q8C0E3 / Trim47 / tripartite motif-containing 47 / Q96LD4*ENSMUSG0000002077324
Q99PP9 / Trim16 / Tripartite motif-containing protein 16 / Q309B1* / O95361* / TRIM16L* / AC005324.3* / tripartite motif containing 16* / tripartite motif containing 16 like*ENSMUSG0000004782121
Q61510 / Trim25 / E3 ubiquitin/ISG15 ligase TRIM25 / Q14258* / tripartite motif containing 25*ENSMUSG0000000027521
Q8R2Q0 / Trim29 / Tripartite motif-containing protein 29 / Q14134* / tripartite motif containing 29*ENSMUSG0000003201317


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR036872  CH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010508 positive regulation of autophagy IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000480 increased number of ribs "greater than normal numbers of the pairs of bony structures that make up the body wall" [MeSH:National Library of Medicine - Medical Subject Headings, 2003]
Show

Allelic Composition: Tmod2tm1b(KOMP)Wtsi/Tmod2tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Tmod2tm1b(KOMP)Wtsi/J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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