ENSMUSG00000047821


Mus musculus

Features
Gene ID: ENSMUSG00000047821
  
Biological name :Trim16
  
Synonyms : Q99PP9 / Trim16 / Tripartite motif-containing protein 16
  
Possible biological names infered from orthology : AC005324.3 / O95361 / Q309B1 / TRIM16L / tripartite motif containing 16 / tripartite motif containing 16 like
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B2
Gene start: 62820231
Gene end: 62850808
  
Corresponding Affymetrix probe sets: 10376899 (MoGene1.0st)   1452362_at (Mouse Genome 430 2.0 Array)   1460629_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000055542
Ensembl peptide - ENSMUSP00000072432
Ensembl peptide - ENSMUSP00000104343
NCBI entrez gene - 94092     See in Manteia.
MGI - MGI:2137356
RefSeq - XM_006534580
RefSeq - NM_053169
RefSeq Peptide - NP_444399
swissprot - Q5SVT1
swissprot - Q5SVT2
swissprot - Q99PP9
Ensembl - ENSMUSG00000047821
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim16ENSDARG00000010673Danio rerio
 AC005324.3ENSG00000251537Homo sapiens
 O95361ENSG00000221926Homo sapiens
 Q309B1ENSG00000108448Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q61510 / Trim25 / E3 ubiquitin/ISG15 ligase TRIM25 / Q14258* / tripartite motif containing 25*ENSMUSG0000000027524
Q8C0E3 / Trim47 / tripartite motif-containing 47 / Q96LD4*ENSMUSG0000002077323
Trim80 / tripartite motif-containing 80ENSMUSG0000007033223
Q8R2Q0 / Trim29 / Tripartite motif-containing protein 29 / Q14134* / tripartite motif containing 29*ENSMUSG0000003201321
Q8BFW4 / Trim65 / Tripartite motif-containing protein 65 / Q6PJ69* / tripartite motif containing 65*ENSMUSG0000005451720


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043966 histone H3 acetylation ISO
 biological_processGO:0043967 histone H4 acetylation ISO
 biological_processGO:0045618 positive regulation of keratinocyte differentiation ISO
 biological_processGO:0045893 positive regulation of transcription, DNA-templated ISO
 biological_processGO:0048386 positive regulation of retinoic acid receptor signaling pathway ISO
 biological_processGO:0050718 positive regulation of interleukin-1 beta secretion ISO
 biological_processGO:0060416 response to growth hormone ISO
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0016605 PML body ISO
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019966 interleukin-1 binding ISO
 molecular_functionGO:0032089 NACHT domain binding ISO
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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