ENSMUSG00000054843


Mus musculus

Features
Gene ID: ENSMUSG00000054843
  
Biological name :Atrnl1
  
Synonyms : Atrnl1 / Attractin-like protein 1 / Q6A051
  
Possible biological names infered from orthology : attractin like 1 / Q5VV63
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: D2
Gene start: 57611034
Gene end: 58133338
  
Corresponding Affymetrix probe sets: 10464251 (MoGene1.0st)   1419922_s_at (Mouse Genome 430 2.0 Array)   1449666_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000076514
NCBI entrez gene - 226255     See in Manteia.
MGI - MGI:2147749
RefSeq - XM_011247244
RefSeq - NM_181415
RefSeq - XM_006527052
RefSeq - XM_006527053
RefSeq - XM_006527049
RefSeq - XM_006527051
RefSeq Peptide - NP_852080
swissprot - Q6A051
Ensembl - ENSMUSG00000054843
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atrnl1aENSDARG00000077188Danio rerio
 atrnl1bENSDARG00000006420Danio rerio
 ATRNL1ENSGALG00000009152Gallus gallus
 ATRNL1ENSG00000107518Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Atrn / Q9WU60 / Attractin / O75882*ENSMUSG0000002731259
Megf8 / P60882 / Multiple epidermal growth factor-like domains protein 8 / Q7Z7M0* / multiple EGF like domains 8*ENSMUSG0000004503924


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR000859  CUB domain
 IPR001304  C-type lectin-like
 IPR002049  Laminin EGF domain
 IPR002165  Plexin repeat
 IPR006652  Kelch repeat type 1
 IPR013032  EGF-like, conserved site
 IPR013111  EGF-like domain, extracellular
 IPR015915  Kelch-type beta propeller
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR016201  PSI domain
 IPR034011  Attractin-like, C-type lectin-like domain
 IPR035914  Spermadhesin, CUB domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IPI
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0005330 cardiomyopathy "diseases of the heart (myocardium); may result from many causes" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator, J:80681]
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Allelic Composition: Atrnmg-3J/Atrnmg-3J
Genetic Background: C3HeB/FeJ-Atrnmg-3J

 MP:0008025 brain vacuoles "the abnormal presence of cavities or fluid-filled vesicles in the soma of brain cells, often indicative of spongiosis or other pathological states" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Atrnmg-3J/Atrnmg-3J,Atrnl1tm1Gsb/Atrnl1tm1Gsb
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C3H * C3HeB/FeJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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