ENSMUSG00000055491


Mus musculus

Features
Gene ID: ENSMUSG00000055491
  
Biological name :Pprc1
  
Synonyms : Mus musculus peroxisome proliferative activated receptor, gamma, coactivator-related 1 (Pprc1), transcript variant 2, mRNA. / Pprc1 / Q6NZN1
  
Possible biological names infered from orthology : peroxisome proliferator-activated receptor gamma, coactivator-related 1 / Q5VV67
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: C3
Gene start: 46044886
Gene end: 46072915
  
Corresponding Affymetrix probe sets: 10463517 (MoGene1.0st)   1426381_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000116857
Ensembl peptide - ENSMUSP00000107530
Ensembl peptide - ENSMUSP00000119672
Ensembl peptide - ENSMUSP00000121680
Ensembl peptide - ENSMUSP00000120475
Ensembl peptide - ENSMUSP00000079389
Ensembl peptide - ENSMUSP00000096990
NCBI entrez gene - 226169     See in Manteia.
MGI - MGI:2385096
RefSeq - XM_017318166
RefSeq - XM_006527008
RefSeq - XM_006527009
RefSeq - XM_006527010
RefSeq - XM_006527011
RefSeq - XM_011247239
RefSeq - XM_011247240
RefSeq - XM_011247241
RefSeq - NM_001081214
RefSeq - NM_001346801
RefSeq - XM_006527007
RefSeq Peptide - NP_001074683
RefSeq Peptide - NP_001333730
swissprot - D3Z1F1
swissprot - D3Z2D9
swissprot - D3YYR7
swissprot - Q6NZN1
swissprot - D3Z1R3
Ensembl - ENSMUSG00000055491
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pprc1ENSDARG00000090337Danio rerio
 si:dkey-93h22.8ENSDARG00000098666Danio rerio
 PPRC1ENSGALG00000020742Gallus gallus
 PPRC1ENSG00000148840Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O70343 / Ppargc1a / Peroxisome proliferator-activated receptor gamma coactivator 1-alpha / Q9UBK2* / PPARG coactivator 1 alpha*ENSMUSG0000002916715
Q8VHJ7 / Ppargc1b / Peroxisome proliferator-activated receptor gamma coactivator 1-beta / Q86YN6* / PPARG coactivator 1 beta*ENSMUSG0000003387114


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034597  PGC-1-related coactivator
 IPR034605  PGC-1
 IPR034834  PGC-1-related coactivator, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IBA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003712 transcription coregulator activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001674 abnormal triploblastic development "abnormal development of the three primary germ layers" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, tc:Teresa Chu , Mouse Genome Informatics Curator]
Show

Allelic Composition: Rgs2tm1.1Kjb/Rgs2tm1.1Kjb,Tg(Tek-cre/ERT2)1Arnd/?
Genetic Background: involves: 129X1/SvJ * C57BL/6 * DBA/2

 MP:0003695 delayed hatching from the zona pellucida "the embryo takes longer than normal to break out of the thick solid transparent outer membrane that surrounds the developing ovum and embryo prior to implantation, may be seen in vivo or in cultured embryos" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Rgs2tm1.1Kjb/Rgs2tm1.1Kjb,Tg(Tek-cre/ERT2)1Arnd/?
Genetic Background: involves: 129X1/SvJ * C57BL/6 * DBA/2

 MP:0003988 disorganized embryonic tissue "a lack of the regular arrangement of any embryonic tissues" [anna:Anna Anagnostopoulos, Mouse Genome Informatics Curator, J:58080]
Show

Allelic Composition: Rgs2tm1.1Kjb/Rgs2tm1.1Kjb,Tg(Tek-cre/ERT2)1Arnd/?
Genetic Background: involves: 129X1/SvJ * C57BL/6 * DBA/2

 MP:0004965 inner cell mass degeneration 
Show

Allelic Composition: Rgs2tm1.1Kjb/Rgs2tm1.1Kjb,Tg(Tek-cre/ERT2)1Arnd/?
Genetic Background: involves: 129X1/SvJ * C57BL/6 * DBA/2

 MP:0011096 complete embryonic lethality before somite formation "death of all organisms of a given genotype in a population between the point of implantation and somite formation (Mus: E4.5 to less than E8)" [MGI:csmith]
Show

Allelic Composition: Rgs2tm1.1Kjb/Rgs2tm1.1Kjb,Tg(Tek-cre/ERT2)1Arnd/?
Genetic Background: involves: 129X1/SvJ * C57BL/6 * DBA/2

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr