ENSDARG00000005315


Danio rerio

Features
Gene ID: ENSDARG00000005315
  
Biological name :celf1
  
Synonyms : celf1 / cugbp, Elav-like family member 1 / Q9IBD0
  
Possible biological names infered from orthology : P28659 / Q92879
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 38535934
Gene end: 38570940
  
Corresponding Affymetrix probe sets: Dr.25366.1.A1_at (Zebrafish Array)   Dr.5803.1.S1_a_at (Zebrafish Array)   NM_131613_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000120872
Ensembl peptide - ENSDARP00000121897
Ensembl peptide - ENSDARP00000041054
Ensembl peptide - ENSDARP00000115192
NCBI entrez gene - 58137     See in Manteia.
RefSeq - NM_001328413
RefSeq - NM_131613
RefSeq - XM_005168991
RefSeq - XM_009303328
RefSeq Peptide - NP_001315342
RefSeq Peptide - NP_571688
swissprot - Q9IBD0
swissprot - E9QIE8
swissprot - E9QEH4
ZFIN ID - ZDB-GENE-000501-1
Ensembl - ENSDARG00000005315
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CELF1ENSGALG00000008097Gallus gallus
 CELF1ENSG00000149187Homo sapiens
 Celf1ENSMUSG00000005506Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
celf2 / Q6P0B1 / cugbp, Elav-like family member 2 / O95319* / Q9Z0H4*ENSDARG0000000213172
celf4 / Q6DGV1 / CUGBP, Elav-like family member 4ENSDARG0000007004543
celf5a / cugbp, Elav-like family member 5a / CELF5* / Q8N6W0* / CUGBP Elav-like family member 5*ENSDARG0000007137542
celf3b / cugbp, Elav-like family member 3b / CELF3* / Q5SZQ8* / Q8CIN6* / CUGBP Elav-like family member 3* / Mus musculus CUGBP, Elav-like family member 3 (Celf3), transcript variant 8, mRNA.*ENSDARG0000000698340
celf3a / Q9IBD1 / cugbp, Elav-like family member 3a / CELF3* / Q5SZQ8* / Q8CIN6* / CUGBP Elav-like family member 3* / Mus musculus CUGBP, Elav-like family member 3 (Celf3), transcript varia...ENSDARG0000003466840
CELF6 / si:dkey-205h23.2 / Q96J87* / AC009690.3* / CUGBP Elav-like family member 6*ENSDARG0000010193337
celf5b / cugbp, Elav-like family member 5b / CELF5* / Q8N6W0* / CUGBP Elav-like family member 5*ENSDARG0000009072733
CABZ01018956.1 / CELF4* / Q7TSY6* / Q9BZC1* / CUGBP Elav-like family member 4*ENSDARG0000011404911
zgc:165603 / CELF5* / Q8N6W0* / CUGBP Elav-like family member 5*ENSDARG000000987029


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002343  Paraneoplastic encephalomyelitis antigen
 IPR034196  CELF1/2, RNA recognition motif 1
 IPR034198  CELF1/2, RNA recognition motif 2
 IPR034199  CELF1/2, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0016477 cell migration IMP
 biological_processGO:0031016 pancreas development IMP
 biological_processGO:0048565 digestive tract development IMP
 biological_processGO:0048588 developmental cell growth IMP
 biological_processGO:0061014 positive regulation of mRNA catabolic process IMP
 biological_processGO:0061031 endodermal digestive tract morphogenesis IMP
 biological_processGO:0061113 pancreas morphogenesis IMP
 biological_processGO:1990402 embryonic liver development IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0045495 pole plasm IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IPI
 molecular_functionGO:0003730 mRNA 3"-UTR binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000017 endoderm endoderm cell migration process quality , abnormal
endoderm cell proliferation decreased process quality , abnormal
endoderm cell decreased amount , abnormal
Show

 ZFA:0000112 gut gut shape , abnormal
gut malformed , abnormal
Show

 ZFA:0000124 liver primordium liver primordium aplastic/hypoplastic , abnormal
Show

 ZFA:0000155 somite somite shape , abnormal
somite asymmetrical , abnormal
Show

 ZFA:0000254 pancreas primordium pancreas primordium aplastic/hypoplastic , abnormal
Show

 ZFA:0009139 endodermal cell endodermal cell cell migration delayed , abnormal
endodermal cell cell migration process quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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