ENSDARG00000034668


Danio rerio

Features
Gene ID: ENSDARG00000034668
  
Biological name :celf3a
  
Synonyms : celf3a / cugbp, Elav-like family member 3a / Q9IBD1
  
Possible biological names infered from orthology : CELF3 / CUGBP Elav-like family member 3 / Mus musculus CUGBP, Elav-like family member 3 (Celf3), transcript variant 8, mRNA. / Q5SZQ8 / Q8CIN6
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 8816657
Gene end: 8880688
  
Corresponding Affymetrix probe sets: Dr.8323.1.S1_at (Zebrafish Array)   NM_131494_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000039628
Ensembl peptide - ENSDARP00000153718
NCBI entrez gene - 57922     See in Manteia.
RefSeq - XM_021468129
RefSeq - NM_131494
RefSeq Peptide - NP_571569
swissprot - Q9IBD1
ZFIN ID - ZDB-GENE-000501-2
Ensembl - ENSDARG00000034668
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000028478Gallus gallus
 CELF3ENSG00000159409Homo sapiens
 Celf3ENSMUSG00000028137Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
celf3b / cugbp, Elav-like family member 3b / CELF3* / Q5SZQ8* / Q8CIN6* / CUGBP Elav-like family member 3* / Mus musculus CUGBP, Elav-like family member 3 (Celf3), transcript variant 8, mRNA.*ENSDARG0000000698383
celf4 / Q6DGV1 / CUGBP, Elav-like family member 4ENSDARG0000007004572
celf5a / cugbp, Elav-like family member 5a / CELF5* / Q8N6W0* / CUGBP Elav-like family member 5*ENSDARG0000007137569
CELF6 / si:dkey-205h23.2 / Q96J87* / AC009690.3* / CUGBP Elav-like family member 6*ENSDARG0000010193364
celf5b / cugbp, Elav-like family member 5b / CELF5* / Q8N6W0* / CUGBP Elav-like family member 5*ENSDARG0000009072752
celf2 / Q6P0B1 / cugbp, Elav-like family member 2 / O95319* / Q9Z0H4*ENSDARG0000000213149
celf1 / Q9IBD0 / cugbp, Elav-like family member 1 / P28659* / Q92879*ENSDARG0000000531548
zgc:165603 / CELF5* / Q8N6W0* / CUGBP Elav-like family member 5*ENSDARG0000009870216
CABZ01018956.1 / CELF4* / Q7TSY6* / Q9BZC1* / CUGBP Elav-like family member 4*ENSDARG000001140496


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034648  CELF-3/4/5/6, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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