ENSDARG00000008188


Danio rerio

Features
Gene ID: ENSDARG00000008188
  
Biological name :sf1
  
Synonyms : sf1 / splicing factor 1
  
Possible biological names infered from orthology : Q15637 / Q64213
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 22809905
Gene end: 22820816
  
Corresponding Affymetrix probe sets: Dr.10662.1.A1_at (Zebrafish Array)   NM_212653_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000026464
Ensembl peptide - ENSDARP00000130303
Ensembl peptide - ENSDARP00000116837
Ensembl peptide - ENSDARP00000105365
NCBI entrez gene - 572785     See in Manteia.
RefSeq - NM_212653
RefSeq - XM_009303075
RefSeq - XM_009303077
RefSeq Peptide - NP_997818
swissprot - E9QHL8
swissprot - E9QF75
swissprot - A0A0R4IBT0
swissprot - F1QP64
ZFIN ID - ZDB-GENE-030131-2492
Ensembl - ENSDARG00000008188
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SF1ENSG00000168066Homo sapiens
 Sf1ENSMUSG00000024949Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
qkib / QKI, KH domain containing, RNA binding bENSDARG0000000202614
qkia / QKI, KH domain containing, RNA binding a / Qk* / QKI* / Q9QYS9* / Q96PU8* / Protein quaking * / QKI, KH domain containing RNA binding*ENSDARG0000009747814
qki2 / Q6P104 / QKI, KH domain containing, RNA binding 2ENSDARG0000001001813
khdrbs1a / KH domain containing, RNA binding, signal transduction associated 1a / Q07666* / Q60749* / KHDRBS1* / KH RNA binding domain containing, signal transduction associated 1* / KH dom...ENSDARG0000005285611
Q08BJ2 / khdrbs2 / KH domain containing, RNA binding, signal transduction associated 2 / Q9WU01* / Q5VWX1* / KH RNA binding domain containing, signal transduction associated 2* / KH domain-...ENSDARG0000006946911
khdrbs1b / KH domain containing, RNA binding, signal transduction associated 1b / Q07666* / Q60749* / KHDRBS1* / KH RNA binding domain containing, signal transduction associated 1* / KH dom...ENSDARG0000007047511


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR031150  BBP/SF1 family
 IPR032570  Splicing factor 1, helix-hairpin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0060041 retina development in camera-type eye IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0045131 pre-mRNA branch point binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0000152 retina retina quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001289 ciliary marginal zone ciliary marginal zone poorly differentiated , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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