ENSDARG00000069469


Danio rerio

Features
Gene ID: ENSDARG00000069469
  
Biological name :khdrbs2
  
Synonyms : KH domain containing, RNA binding, signal transduction associated 2 / khdrbs2 / Q08BJ2
  
Possible biological names infered from orthology : KH domain-containing, RNA-binding, signal transduction-associated protein 2 / KH RNA binding domain containing, signal transduction associated 2 / Q5VWX1 / Q9WU01
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 23282549
Gene end: 23388134
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000091908
NCBI entrez gene - 768147     See in Manteia.
RefSeq - NM_001077290
RefSeq Peptide - NP_001070758
swissprot - Q08BJ2
ZFIN ID - ZDB-GENE-061013-497
Ensembl - ENSDARG00000069469
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KHDRBS2ENSGALG00000016276Gallus gallus
 Q5VWX1ENSG00000112232Homo sapiens
 Q9WU01ENSMUSG00000026058Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
khdrbs1b / KH domain containing, RNA binding, signal transduction associated 1b / Q07666* / Q60749* / KHDRBS1* / KH RNA binding domain containing, signal transduction associated 1* / KH dom...ENSDARG0000007047553
khdrbs1a / KH domain containing, RNA binding, signal transduction associated 1a / Q07666* / Q60749* / KHDRBS1* / KH RNA binding domain containing, signal transduction associated 1* / KH dom...ENSDARG0000005285647
qki2 / Q6P104 / QKI, KH domain containing, RNA binding 2ENSDARG0000001001828
qkia / QKI, KH domain containing, RNA binding a / Qk* / QKI* / Q9QYS9* / Q96PU8* / Protein quaking * / QKI, KH domain containing RNA binding*ENSDARG0000009747828
qkib / QKI, KH domain containing, RNA binding bENSDARG0000000202627
sf1 / splicing factor 1 / Q15637* / Q64213*ENSDARG0000000818822


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR032335  Sam68, tyrosine-rich domain
 IPR032571  KHDRBS, Qua1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
PTK6 Regulates Proteins Involved in RNA Processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000059956 ptk6b / PTK6 protein tyrosine kinase 6b / PTK6* / Q64434* / Q13882* / protein tyrosine kinase 6* / PTK6 protein tyrosine kinase 6*  / reaction
 ENSDARG00000017947 ptk6a / PTK6 protein tyrosine kinase 6a / PTK6* / Q64434* / Q13882* / protein tyrosine kinase 6* / PTK6 protein tyrosine kinase 6*  / reaction






 

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