ENSDARG00000097478


Danio rerio

Features
Gene ID: ENSDARG00000097478
  
Biological name :qkia
  
Synonyms : qkia / QKI, KH domain containing, RNA binding a
  
Possible biological names infered from orthology : Protein quaking / Q96PU8 / Q9QYS9 / Qk / QKI / QKI, KH domain containing RNA binding
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 27723490
Gene end: 27814135
  
Corresponding Affymetrix probe sets: Dr.26407.1.S1_at (Zebrafish Array)   Dr.554.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000105382
Ensembl peptide - ENSDARP00000141438
Ensembl peptide - ENSDARP00000140694
Ensembl peptide - ENSDARP00000131081
NCBI entrez gene - 30471     See in Manteia.
swissprot - A9JTF1
swissprot - A0A0R4IYR5
swissprot - A0A0R4IA73
swissprot - F6NV62
ZFIN ID - ZDB-GENE-990415-230
Ensembl - ENSDARG00000097478
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 QKIENSGALG00000011555Gallus gallus
 QKIENSG00000112531Homo sapiens
 QkENSMUSG00000062078Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
qkib / QKI, KH domain containing, RNA binding bENSDARG0000000202663
qki2 / Q6P104 / QKI, KH domain containing, RNA binding 2ENSDARG0000001001863
khdrbs1a / KH domain containing, RNA binding, signal transduction associated 1a / Q07666* / Q60749* / KHDRBS1* / KH RNA binding domain containing, signal transduction associated 1* / KH dom...ENSDARG0000005285626
khdrbs1b / KH domain containing, RNA binding, signal transduction associated 1b / Q07666* / Q60749* / KHDRBS1* / KH RNA binding domain containing, signal transduction associated 1* / KH dom...ENSDARG0000007047526
Q08BJ2 / khdrbs2 / KH domain containing, RNA binding, signal transduction associated 2 / Q9WU01* / Q5VWX1* / KH RNA binding domain containing, signal transduction associated 2* / KH domain-...ENSDARG0000006946925
sf1 / splicing factor 1 / Q15637* / Q64213*ENSDARG0000000818824


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR032367  Protein quaking, putative nuclear localisation signal
 IPR032377  STAR protein, homodimerisation region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000003 adaxial cell adaxial cell mislocalised , abnormal
adaxial cell physical object quality , abnormal
Show

 ZFA:0000155 somite somite U-shaped , abnormal
Show

 ZFA:0001056 myotome myotome malformed , abnormal
Show

 ZFA:0001086 muscle pioneer muscle pioneer decreased amount , abnormal
Show

 ZFA:0001513 dermomyotome dermomyotome increased amount , abnormal
Show

 ZFA:0009116 slow muscle cell slow muscle cell mislocalised , abnormal
slow muscle cell decreased amount , abnormal
Show

 ZFA:0009117 fast muscle cell fast muscle cell mononucleate , abnormal
fast muscle cell immature , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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