ENSDARG00000012504


Danio rerio

Features
Gene ID: ENSDARG00000012504
  
Biological name :rlbp1a
  
Synonyms : retinaldehyde binding protein 1a / rlbp1a
  
Possible biological names infered from orthology : P12271 / Q9Z275 / retinaldehyde binding protein 1 / RLBP1
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 13867722
Gene end: 13884610
  
Corresponding Affymetrix probe sets: Dr.11085.1.A1_at (Zebrafish Array)   NM_200705_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000026805
Ensembl peptide - ENSDARP00000130517
NCBI entrez gene - 393678     See in Manteia.
RefSeq - NM_200705
RefSeq Peptide - NP_956999
swissprot - F1QVD3
swissprot - A0A0R4I9W1
ZFIN ID - ZDB-GENE-040426-1662
Ensembl - ENSDARG00000012504
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RLBP1ENSGALG00000006676Gallus gallus
 RLBP1ENSG00000140522Homo sapiens
 Rlbp1ENSMUSG00000039194Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rlbp1b / retinaldehyde binding protein 1b / RLBP1* / P12271* / Q9Z275* / retinaldehyde binding protein 1*ENSDARG0000004580879
clvs2 / Q5SPP0 / clavesin 2 / CLVS1* / Q8IUQ0* / clavesin 1*ENSDARG0000005312232
ttpal / tocopherol (alpha) transfer protein-like / Q9BTX7* / Q9D3D0* / alpha tocopherol transfer protein like*ENSDARG0000007064430
ttpa / tocopherol (alpha) transfer protein / P49638* / Q8BWP5* / alpha tocopherol transfer protein*ENSDARG0000002758424


Protein motifs (from Interpro)
Interpro ID Name
 IPR001251  CRAL-TRIO lipid binding domain
 IPR011074  CRAL/TRIO, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007634 optokinetic behavior IMP
 biological_processGO:0009416 response to light stimulus IMP
 molecular_functionGO:0016918 retinal binding IEA


Pathways (from Reactome)
Pathway description
The retinoid cycle in cones (daylight vision)
The canonical retinoid cycle in rods (twilight vision)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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