ENSDARG00000053122


Danio rerio

Features
Gene ID: ENSDARG00000053122
  
Biological name :clvs2
  
Synonyms : clavesin 2 / clvs2 / Q5SPP0
  
Possible biological names infered from orthology : clavesin 1 / CLVS1 / Q8IUQ0 / Q9D4C9
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 40269891
Gene end: 40319890
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000069597
NCBI entrez gene - 566769     See in Manteia.
RefSeq - NM_001025545
RefSeq Peptide - NP_001020716
swissprot - Q5SPP0
ZFIN ID - ZDB-GENE-041014-313
Ensembl - ENSDARG00000053122
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLVS1ENSG00000177182Homo sapiens
 Clvs1ENSMUSG00000041216Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ttpal / tocopherol (alpha) transfer protein-like / Q9BTX7* / Q9D3D0* / alpha tocopherol transfer protein like*ENSDARG0000007064434
rlbp1a / retinaldehyde binding protein 1a / RLBP1* / P12271* / retinaldehyde binding protein 1*ENSDARG0000001250430
rlbp1b / retinaldehyde binding protein 1b / RLBP1* / P12271* / Q9Z275* / retinaldehyde binding protein 1*ENSDARG0000004580830
ttpa / tocopherol (alpha) transfer protein / P49638* / Q8BWP5* / alpha tocopherol transfer protein*ENSDARG0000002758423


Protein motifs (from Interpro)
Interpro ID Name
 IPR001251  CRAL-TRIO lipid binding domain
 IPR011074  CRAL/TRIO, N-terminal domain
 IPR028636  Clavesin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007040 lysosome organization IEA
 cellular_componentGO:0005768 endosome ISS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030136 clathrin-coated vesicle ISS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031901 early endosome membrane IEA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0080025 phosphatidylinositol-3,5-bisphosphate binding ISS


Pathways (from Reactome)
Pathway description
Lysosome Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000096454 ap1m2 / adaptor-related protein complex 1, mu 2 subunit / Q9Y6Q5*  / complex
 ENSDARG00000027966 ap1s3b / adaptor-related protein complex 1, sigma 3 subunit, b / AP1S3* / Q96PC3* / Q7TN05* / AP-1 complex subunit sigma-3 * / adaptor related protein complex 1 sigma 3 subunit*  / complex
 ENSDARG00000056803 ap1s1 / adaptor-related protein complex 1, sigma 1 subunit / P61966* / P61967* / AP-1 complex subunit sigma-1A *  / complex
 ENSDARG00000020621 ap1b1 / adaptor-related protein complex 1, beta 1 subunit / O35643* / Q10567* / Mus musculus adaptor protein complex AP-1, beta 1 subunit (Ap1b1), transcript variant 4, mRNA.*  / complex
 ENSDARG00000090716 cltcb / clathrin, heavy chain b (Hc) / CLTC* / Q00610* / clathrin heavy chain*  / complex
 ENSDARG00000110439 ap1s3a / adaptor-related protein complex 1, sigma 3 subunit, a / AP1S3* / Q96PC3* / adaptor related protein complex 1 sigma 3 subunit*  / complex
 ENSDARG00000096249 ap1m1 / adaptor-related protein complex 1, mu 1 subunit / Q9BXS5*  / complex






 

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