ENSDARG00000016233


Danio rerio

Features
Gene ID: ENSDARG00000016233
  
Biological name :sdr16c5a
  
Synonyms : sdr16c5a / short chain dehydrogenase/reductase family 16C, member 5a
  
Possible biological names infered from orthology : Epidermal retinol dehydrogenase 2 / Q05A13 / Q7TQA3 / Q8N3Y7 / SDR16C5 / Sdr16c6 / short chain dehydrogenase/reductase family 16C member 5 / Short-chain dehydrogenase/reductase family 16C member 6
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 11483072
Gene end: 11504778
  
Corresponding Affymetrix probe sets: Dr.90.1.A1_at (Zebrafish Array)   NM_212878_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000156921
Ensembl peptide - ENSDARP00000008564
NCBI entrez gene - 405814     See in Manteia.
RefSeq - NM_212878
RefSeq Peptide - NP_998043
swissprot - A8E7S3
ZFIN ID - ZDB-GENE-040426-2049
Ensembl - ENSDARG00000016233
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDR16C5ENSGALG00000015416Gallus gallus
 Q8N3Y7ENSG00000170786Homo sapiens
 Q05A13ENSMUSG00000071019Mus musculus
 Q7TQA3ENSMUSG00000028236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sdr16c5b / short chain dehydrogenase/reductase family 16C, member 5bENSDARG0000001779469
si:dkey-221h15.4 / Q7TQA3* / Q05A13* / Q8N3Y7* / Sdr16c6* / SDR16C5* / Epidermal retinol dehydrogenase 2 * / short chain dehydrogenase/reductase family 16C member 5* / Short-chain dehydroge...ENSDARG0000004187356
rdh10b / Q7T2D1 / retinol dehydrogenase 10b / RDH10* / Q8VCH7* / Q8IZV5* / retinol dehydrogenase 10*ENSDARG0000001236948
rdh20 / retinol dehydrogenase 20ENSDARG0000002886244
rdh10a / retinol dehydrogenase 10a / RDH10* / Q8VCH7* / Q8IZV5* / retinol dehydrogenase 10*ENSDARG0000005873044
dhrs3b / dehydrogenase/reductase (SDR family) member 3b / DHRS3* / O88876* / O75911* / dehydrogenase/reductase 3* / Short-chain dehydrogenase/reductase 3 *ENSDARG0000004480339
dhrs3a / dehydrogenase/reductase (SDR family) member 3a / DHRS3* / O88876* / O75911* / dehydrogenase/reductase 3* / Short-chain dehydrogenase/reductase 3 *ENSDARG0000004498238


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR016040  NAD(P)-binding domain
 IPR020904  Short-chain dehydrogenase/reductase, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0016491 oxidoreductase activity IEA


Pathways (from Reactome)
Pathway description
RA biosynthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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