ENSDARG00000041873


Danio rerio

Features
Gene ID: ENSDARG00000041873
  
Biological name :si:dkey-221h15.4
  
Synonyms : si:dkey-221h15.4
  
Possible biological names infered from orthology : Epidermal retinol dehydrogenase 2 / Q05A13 / Q7TQA3 / Q8N3Y7 / SDR16C5 / Sdr16c6 / short chain dehydrogenase/reductase family 16C member 5 / Short-chain dehydrogenase/reductase family 16C member 6
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 38831588
Gene end: 38836161
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000061357
NCBI entrez gene - 563950     See in Manteia.
RefSeq - XM_017352670
swissprot - F1QS94
ZFIN ID - ZDB-GENE-041014-340
Ensembl - ENSDARG00000041873
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDR16C5ENSGALG00000015416Gallus gallus
 Q8N3Y7ENSG00000170786Homo sapiens
 Q05A13ENSMUSG00000071019Mus musculus
 Q7TQA3ENSMUSG00000028236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sdr16c5a / short chain dehydrogenase/reductase family 16C, member 5a / Q05A13* / Q7TQA3* / Q8N3Y7* / SDR16C5* / Sdr16c6* / Epidermal retinol dehydrogenase 2 * / short chain dehydrogenase/re...ENSDARG0000001623349
sdr16c5b / short chain dehydrogenase/reductase family 16C, member 5bENSDARG0000001779443
rdh10b / Q7T2D1 / retinol dehydrogenase 10b / RDH10* / Q8VCH7* / Q8IZV5* / retinol dehydrogenase 10*ENSDARG0000001236936
rdh20 / retinol dehydrogenase 20ENSDARG0000002886236
rdh10a / retinol dehydrogenase 10a / RDH10* / Q8VCH7* / Q8IZV5* / retinol dehydrogenase 10*ENSDARG0000005873036
dhrs3b / dehydrogenase/reductase (SDR family) member 3b / DHRS3* / O88876* / O75911* / dehydrogenase/reductase 3* / Short-chain dehydrogenase/reductase 3 *ENSDARG0000004480331
dhrs3a / dehydrogenase/reductase (SDR family) member 3a / DHRS3* / O88876* / O75911* / dehydrogenase/reductase 3* / Short-chain dehydrogenase/reductase 3 *ENSDARG0000004498230


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR016040  NAD(P)-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
RA biosynthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr