ENSDARG00000012369


Danio rerio

Features
Gene ID: ENSDARG00000012369
  
Biological name :rdh10b
  
Synonyms : Q7T2D1 / rdh10b / retinol dehydrogenase 10b
  
Possible biological names infered from orthology : Q8IZV5 / Q8VCH7 / RDH10 / retinol dehydrogenase 10
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 30182431
Gene end: 30186307
  
Corresponding Affymetrix probe sets: Dr.1012.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000011528
swissprot - Q7T2D1
ZFIN ID - ZDB-GENE-030909-7
Ensembl - ENSDARG00000012369
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RDH10ENSGALG00000034346Gallus gallus
 RDH10ENSG00000121039Homo sapiens
 Rdh10ENSMUSG00000025921Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rdh10a / retinol dehydrogenase 10a / RDH10* / Q8VCH7* / Q8IZV5* / retinol dehydrogenase 10*ENSDARG0000005873079
rdh20 / retinol dehydrogenase 20ENSDARG0000002886251
sdr16c5a / short chain dehydrogenase/reductase family 16C, member 5a / Q05A13* / Q7TQA3* / Q8N3Y7* / SDR16C5* / Sdr16c6* / Epidermal retinol dehydrogenase 2 * / short chain dehydrogenase/re...ENSDARG0000001623344
sdr16c5b / short chain dehydrogenase/reductase family 16C, member 5bENSDARG0000001779441
si:dkey-221h15.4 / Q7TQA3* / Q05A13* / Q8N3Y7* / Sdr16c6* / SDR16C5* / Epidermal retinol dehydrogenase 2 * / short chain dehydrogenase/reductase family 16C member 5* / Short-chain dehydroge...ENSDARG0000004187338
dhrs3b / dehydrogenase/reductase (SDR family) member 3b / DHRS3* / O88876* / O75911* / dehydrogenase/reductase 3* / Short-chain dehydrogenase/reductase 3 *ENSDARG0000004480334
dhrs3a / dehydrogenase/reductase (SDR family) member 3a / DHRS3* / O88876* / O75911* / dehydrogenase/reductase 3* / Short-chain dehydrogenase/reductase 3 *ENSDARG0000004498232


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR016040  NAD(P)-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002138 retinoic acid biosynthetic process IEA
 biological_processGO:0042572 retinol metabolic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031090 organelle membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0052650 NADP-retinol dehydrogenase activity IEA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
RA biosynthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000045808 rlbp1b / retinaldehyde binding protein 1b / RLBP1* / P12271* / Q9Z275* / retinaldehyde binding protein 1*  / reaction






 

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