ENSDARG00000058730


Danio rerio

Features
Gene ID: ENSDARG00000058730
  
Biological name :rdh10a
  
Synonyms : rdh10a / retinol dehydrogenase 10a
  
Possible biological names infered from orthology : Q8IZV5 / Q8VCH7 / RDH10 / retinol dehydrogenase 10
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 13251480
Gene end: 13272843
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000066702
Ensembl peptide - ENSDARP00000114909
NCBI entrez gene - 562840     See in Manteia.
RefSeq - NM_001080583
RefSeq Peptide - NP_001074052
swissprot - F1RES0
swissprot - E9QDL7
ZFIN ID - ZDB-GENE-070112-2242
Ensembl - ENSDARG00000058730
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RDH10ENSGALG00000034346Gallus gallus
 RDH10ENSG00000121039Homo sapiens
 Rdh10ENSMUSG00000025921Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rdh10b / Q7T2D1 / retinol dehydrogenase 10b / RDH10* / Q8VCH7* / Q8IZV5* / retinol dehydrogenase 10*ENSDARG0000001236978
rdh20 / retinol dehydrogenase 20ENSDARG0000002886251
sdr16c5a / short chain dehydrogenase/reductase family 16C, member 5a / Q05A13* / Q7TQA3* / Q8N3Y7* / SDR16C5* / Sdr16c6* / Epidermal retinol dehydrogenase 2 * / short chain dehydrogenase/re...ENSDARG0000001623340
sdr16c5b / short chain dehydrogenase/reductase family 16C, member 5bENSDARG0000001779438
si:dkey-221h15.4 / Q7TQA3* / Q05A13* / Q8N3Y7* / Sdr16c6* / SDR16C5* / Epidermal retinol dehydrogenase 2 * / short chain dehydrogenase/reductase family 16C member 5* / Short-chain dehydroge...ENSDARG0000004187337
dhrs3b / dehydrogenase/reductase (SDR family) member 3b / DHRS3* / O88876* / O75911* / dehydrogenase/reductase 3* / Short-chain dehydrogenase/reductase 3 *ENSDARG0000004480332
dhrs3a / dehydrogenase/reductase (SDR family) member 3a / DHRS3* / O88876* / O75911* / dehydrogenase/reductase 3* / Short-chain dehydrogenase/reductase 3 *ENSDARG0000004498232


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR016040  NAD(P)-binding domain
 IPR020904  Short-chain dehydrogenase/reductase, conserved site
 IPR032970  Retinol dehydrogenase 10


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002138 retinoic acid biosynthetic process IEA
 biological_processGO:0042572 retinol metabolic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0052650 NADP-retinol dehydrogenase activity IEA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
RA biosynthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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