ENSGALG00000034346


Gallus gallus

Features
Gene ID: ENSGALG00000034346
  
Biological name :RDH10
  
Synonyms : RDH10 / retinol dehydrogenase 10
  
Possible biological names infered from orthology : Q8IZV5 / Q8VCH7
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 118162623
Gene end: 118187363
  
Corresponding Affymetrix probe sets: Gga.2606.1.A1_at (Chicken Array)   Gga.2606.1.S1_at (Chicken Array)   Gga.2606.1.S1_x_at (Chicken Array)   Gga.9686.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053866
NCBI entrez gene - 420183     See in Manteia.
RefSeq - NM_001199459
RefSeq - XM_015282780
RefSeq Peptide - NP_001186388
swissprot - A0A1D5PLZ3
Ensembl - ENSGALG00000034346
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7T2D1ENSDARG00000012369Danio rerio
 rdh10aENSDARG00000058730Danio rerio
 RDH10ENSG00000121039Homo sapiens
 Rdh10ENSMUSG00000025921Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SDR16C5 / epidermal retinol dehydrogenase 2 / Q8N3Y7* / Q05A13* / Q7TQA3* / Sdr16c6* / short chain dehydrogenase/reductase family 16C member 5* / Short-chain dehydrogenase/reductase family...ENSGALG0000001541643
Q9EQ06* / Q7Z5P4* / Q8NBQ5* / Q8VCR2* / HSD17B11* / HSD17B13* / hydroxysteroid 17-beta dehydrogenase 11* / hydroxysteroid 17-beta dehydrogenase 13*ENSGALG0000001097937
ENSGALG0000002282733
DHRS3 / dehydrogenase/reductase 3 / O75911* / O88876* / Short-chain dehydrogenase/reductase 3 *ENSGALG0000003037632


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR016040  NAD(P)-binding domain
 IPR020904  Short-chain dehydrogenase/reductase, conserved site
 IPR032970  Retinol dehydrogenase 10


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001656 metanephros development IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0002138 retinoic acid biosynthetic process IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0008406 gonad development IEA
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0014032 neural crest cell development IEA
 biological_processGO:0031076 embryonic camera-type eye development IEA
 biological_processGO:0035115 embryonic forelimb morphogenesis IEA
 biological_processGO:0042572 retinol metabolic process IEA
 biological_processGO:0042574 retinal metabolic process IEA
 biological_processGO:0043583 ear development IEA
 biological_processGO:0043584 nose development IEA
 biological_processGO:0048568 embryonic organ development IEA
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060431 primary lung bud formation IEA
 biological_processGO:0060449 bud elongation involved in lung branching IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004745 retinol dehydrogenase activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0052650 NADP-retinol dehydrogenase activity IEA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
RA biosynthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000006676 RLBP1 / retinaldehyde binding protein 1 / P12271* / Q9Z275*  / reaction






 

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