ENSDARG00000018000


Danio rerio
ubp1factorcpsterilealphamotifpointeddomainsuperfamilyregulationrnapolymeraseiinucleusdna-bindingactivitysequence-specificdnabinding

Features
Gene ID: ENSDARG00000018000
  
Biological name :ubp1
  
Synonyms : ubp1 / upstream binding protein 1
  
Possible biological names infered from orthology : Q811S7 / Q9NZI7
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 42806812
Gene end: 42841889
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000100868
Ensembl peptide - ENSDARP00000126205
NCBI entrez gene - 100136855     See in Manteia.
RefSeq - NM_001114574
RefSeq Peptide - NP_001108046
swissprot - I3ITE2
swissprot - A3KPT8
ZFIN ID - ZDB-GENE-060503-870
Ensembl - ENSDARG00000018000
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UBP1ENSGALG00000035630Gallus gallus
 UBP1ENSG00000153560Homo sapiens
 Ubp1ENSMUSG00000009741Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tfcp2 / transcription factor CP2 / Q12800* / Q9ERA0* / Mus musculus transcription factor CP2 (Tfcp2), transcript variant 3, mRNA.*ENSDARG0000006030661
tfcp2l1 / transcription factor CP2-like 1 / Q3UNW5* / Q9NZI6* / Transcription factor CP2-like protein 1 *ENSDARG0000002949749
grhl1 / grainyhead-like transcription factor 1 / Q921D9* / Q9NZI5* / Grainyhead-like *ENSDARG0000006139123
grhl2b / grainyhead-like transcription factor 2b / GRHL2* / Q6ISB3* / Q8K5C0* / Grainyhead-like * / grainyhead like transcription factor 2*ENSDARG0000006197423
grhl2a / grainyhead-like transcription factor 2a / GRHL2* / Q6ISB3* / Q8K5C0* / Grainyhead-like * / grainyhead like transcription factor 2*ENSDARG0000005834221
grhl3 / grainyhead-like transcription factor 3 / Q5FWH3* / Q8TE85* / Grainyhead-like *ENSDARG0000007855219


Protein motifs (from Interpro)
Interpro ID Name
 IPR007604  CP2 transcription factor
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic nitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic organic substance metabolic process
DNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityDNA-binding transcription factor activityorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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