ENSDARG00000078552


Danio rerio

Features
Gene ID: ENSDARG00000078552
  
Biological name :grhl3
  
Synonyms : grainyhead-like transcription factor 3 / grhl3
  
Possible biological names infered from orthology : Grainyhead-like / Q5FWH3 / Q8TE85
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 26965351
Gene end: 26977183
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000097661
Ensembl peptide - ENSDARP00000116930
NCBI entrez gene - 794613     See in Manteia.
RefSeq - XM_005158558
RefSeq - XM_021467429
RefSeq - XM_021473186
swissprot - E9QHG8
swissprot - E7F6C3
ZFIN ID - ZDB-GENE-030131-9854
Ensembl - ENSDARG00000078552
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GRHL3ENSGALG00000004249Gallus gallus
 GRHL3ENSG00000158055Homo sapiens
 Grhl3ENSMUSG00000037188Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
grhl2a / grainyhead-like transcription factor 2a / GRHL2* / Q6ISB3* / Q8K5C0* / Grainyhead-like * / grainyhead like transcription factor 2*ENSDARG0000005834241
grhl1 / grainyhead-like transcription factor 1 / Q921D9* / Q9NZI5* / Grainyhead-like *ENSDARG0000006139141
grhl2b / grainyhead-like transcription factor 2b / GRHL2* / Q6ISB3* / Q8K5C0* / Grainyhead-like * / grainyhead like transcription factor 2*ENSDARG0000006197440
ubp1 / upstream binding protein 1 / Q811S7* / Q9NZI7*ENSDARG0000001800018
tfcp2 / transcription factor CP2 / Q12800* / Q9ERA0* / Mus musculus transcription factor CP2 (Tfcp2), transcript variant 3, mRNA.*ENSDARG0000006030618
tfcp2l1 / transcription factor CP2-like 1 / Q3UNW5* / Q9NZI6* / Transcription factor CP2-like protein 1 *ENSDARG0000002949717


Protein motifs (from Interpro)
Interpro ID Name
 IPR007604  CP2 transcription factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0008544 epidermis development IGI
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IMP
 biological_processGO:0060325 face morphogenesis IMP
 biological_processGO:0071466 cellular response to xenobiotic stimulus IDA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000056 pharynx pharynx apoptotic process increased process quality , abnormal
Show

 ZFA:0000086 EVL EVL decreased distribution , abnormal
EVL decreased amount , abnormal
Show

 ZFA:0000547 mouth mouth malformed , abnormal
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 ZFA:0001094 whole organism whole organism broken , abnormal
whole organism decreased amount , abnormal
Show

 ZFA:0001185 periderm periderm hypoplastic , abnormal
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 ZFA:0001205 Meckel s cartilage Meckels cartilage hypoplastic , abnormal
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 ZFA:0001216 splanchnocranium splanchnocranium hypoplastic , abnormal
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 ZFA:0001272 palatoquadrate arch palatoquadrate arch hypoplastic , abnormal
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 ZFA:0001273 ventral mandibular arch ventral mandibular arch cell proliferation decreased process quality , abnormal
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 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage hypoplastic , abnormal
Show

 ZFA:0001510 basihyal cartilage basihyal cartilage aplastic , abnormal
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 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage aplastic , abnormal
Show

 ZFA:0005155 cartilaginous joint cartilaginous joint aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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