ENSDARG00000060306


Danio rerio

Features
Gene ID: ENSDARG00000060306
  
Biological name :tfcp2
  
Synonyms : tfcp2 / transcription factor CP2
  
Possible biological names infered from orthology : Mus musculus transcription factor CP2 (Tfcp2), transcript variant 3, mRNA. / Q12800 / Q9ERA0
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 33654231
Gene end: 33680265
  
Corresponding Affymetrix probe sets: Dr.3110.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000152375
Ensembl peptide - ENSDARP00000121618
NCBI entrez gene - 100001906     See in Manteia.
RefSeq - XM_005162354
RefSeq - XM_005162355
swissprot - E7EYC1
ZFIN ID - ZDB-GENE-030131-2523
Ensembl - ENSDARG00000060306
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TFCP2ENSG00000135457Homo sapiens
 Tfcp2ENSMUSG00000009733Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ubp1 / upstream binding protein 1 / Q811S7* / Q9NZI7*ENSDARG0000001800063
tfcp2l1 / transcription factor CP2-like 1 / Q3UNW5* / Q9NZI6* / Transcription factor CP2-like protein 1 *ENSDARG0000002949759
grhl2b / grainyhead-like transcription factor 2b / GRHL2* / Q6ISB3* / Q8K5C0* / Grainyhead-like * / grainyhead like transcription factor 2*ENSDARG0000006197424
grhl1 / grainyhead-like transcription factor 1 / Q921D9* / Q9NZI5* / Grainyhead-like *ENSDARG0000006139123
grhl2a / grainyhead-like transcription factor 2a / GRHL2* / Q6ISB3* / Q8K5C0* / Grainyhead-like * / grainyhead like transcription factor 2*ENSDARG0000005834222
grhl3 / grainyhead-like transcription factor 3 / Q5FWH3* / Q8TE85* / Grainyhead-like *ENSDARG0000007855220


Protein motifs (from Interpro)
Interpro ID Name
 IPR007604  CP2 transcription factor
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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