ENSDARG00000018325


Danio rerio

Features
Gene ID: ENSDARG00000018325
  
Biological name :taf5
  
Synonyms : taf5 / TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : Q15542 / TATA-box binding protein associated factor 5
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 49415281
Gene end: 49432147
  
Corresponding Affymetrix probe sets: Dr.4429.1.A1_at (Zebrafish Array)   NM_001037431_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000015825
NCBI entrez gene - 641491     See in Manteia.
RefSeq - NM_001037431
RefSeq Peptide - NP_001032508
swissprot - B8JIQ0
ZFIN ID - ZDB-GENE-051120-180
Ensembl - ENSDARG00000018325
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF5ENSGALG00000008241Gallus gallus
 TAF5ENSG00000148835Homo sapiens
 Taf5ENSMUSG00000025049Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
taf5l / TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor / Q91WQ5* / O75529* / TATA-box binding protein associated factor 5 like* / Mus musculus TATA-box bin...ENSDARG0000002580828
atg16l1 / ATG16 autophagy related 16-like 1 (S. cerevisiae) / Q8C0J2* / Q676U5* / autophagy related 16 like 1* / autophagy related 16-like 1 (S. cerevisiae)*ENSDARG0000009943013
wdr83 / WD repeat domain containing 83 / Q9BRX9* / Q9DAJ4* / WD repeat domain 83*ENSDARG000000416009
atg16l2 / ATG16 autophagy related 16-like 2 (S. cerevisiae) / Q8NAA4* / autophagy related 16 like 2*ENSDARG000001093845
atg16l2 / ATG16 autophagy related 16-like 2 (S. cerevisiae) / Q8NAA4* / Q6KAU8* / autophagy related 16 like 2* / autophagy related 16-like 2 (S. cerevisiae)*ENSDARG000000432383


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR007582  TFIID subunit TAF5, NTD2 domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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