ENSDARG00000025808


Danio rerio

Features
Gene ID: ENSDARG00000025808
  
Biological name :taf5l
  
Synonyms : taf5l / TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
  
Possible biological names infered from orthology : Mus musculus TATA-box binding protein associated factor 5 like (Taf5l), transcript variant 2, mRNA. / O75529 / Q91WQ5 / TATA-box binding protein associated factor 5 like
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 53911834
Gene end: 53918839
  
Corresponding Affymetrix probe sets: Dr.12039.1.A1_at (Zebrafish Array)   NM_199852_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000038258
NCBI entrez gene - 334055     See in Manteia.
RefSeq - NM_199852
RefSeq Peptide - NP_956146
swissprot - F1QIA7
ZFIN ID - ZDB-GENE-030131-5987
Ensembl - ENSDARG00000025808
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF5LENSGALG00000011098Gallus gallus
 TAF5LENSG00000135801Homo sapiens
 Taf5lENSMUSG00000038697Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
taf5 / TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor / Q15542* / TATA-box binding protein associated factor 5*ENSDARG0000001832535
atg16l1 / ATG16 autophagy related 16-like 1 (S. cerevisiae) / Q8C0J2* / Q676U5* / autophagy related 16 like 1* / autophagy related 16-like 1 (S. cerevisiae)*ENSDARG0000009943015
wdr83 / WD repeat domain containing 83 / Q9BRX9* / Q9DAJ4* / WD repeat domain 83*ENSDARG0000004160011
atg16l2 / ATG16 autophagy related 16-like 2 (S. cerevisiae) / Q8NAA4* / autophagy related 16 like 2*ENSDARG000001093847
atg16l2 / ATG16 autophagy related 16-like 2 (S. cerevisiae) / Q8NAA4* / Q6KAU8* / autophagy related 16 like 2* / autophagy related 16-like 2 (S. cerevisiae)*ENSDARG000000432384


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR007582  TFIID subunit TAF5, NTD2 domain
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0030914 STAGA complex IEA
 cellular_componentGO:0033276 transcription factor TFTC complex IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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