ENSDARG00000018904


Danio rerio

Features
Gene ID: ENSDARG00000018904
  
Biological name :cstf3
  
Synonyms : cleavage stimulation factor, 3 pre-RNA, subunit 3 / cstf3
  
Possible biological names infered from orthology : cleavage stimulation factor subunit 3 / Q12996 / Q99LI7
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 45734297
Gene end: 45761868
  
Corresponding Affymetrix probe sets: Dr.1279.1.S1_at (Zebrafish Array)   NM_213053_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000003969
NCBI entrez gene - 406326     See in Manteia.
RefSeq - NM_213053
RefSeq Peptide - NP_998218
swissprot - F1QIB2
ZFIN ID - ZDB-GENE-040426-1997
Ensembl - ENSDARG00000018904
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSTF3ENSGALG00000011685Gallus gallus
 CSTF3ENSG00000176102Homo sapiens
 Cstf3ENSMUSG00000027176Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR008847  Suppressor of forked
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006379 mRNA cleavage IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0031123 RNA 3"-end processing IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0001114 head head decreased width , abnormal
head pointed , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000014898 ncbp2 / Q8JGR6 / nuclear cap binding protein subunit 2 / Q9CQ49* / NCBP2L* / P52298* / A6PVI3* / nuclear cap binding protein subunit 2 like*  / complex / reaction
 ENSDARG00000044820 cstf1 / cleavage stimulation factor, 3 pre-RNA, subunit 1 / Q05048* / Q99LC2* / cleavage stimulation factor subunit 1*  / complex
 ENSDARG00000090788 cstf2 / cleavage stimulation factor, 3 pre-RNA, subunit 2 / P33240* / CSTF2T* / Q8C7E9* / Q9H0L4* / Q8BIQ5* / cleavage stimulation factor subunit 2* / cleavage stimulation factor subunit 2 ...  / complex






 

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