ENSDARG00000090788


Danio rerio

Features
Gene ID: ENSDARG00000090788
  
Biological name :cstf2
  
Synonyms : cleavage stimulation factor, 3 pre-RNA, subunit 2 / cstf2
  
Possible biological names infered from orthology : cleavage stimulation factor subunit 2 / cleavage stimulation factor subunit 2 tau variant / CSTF2T / P33240 / Q8BIQ5 / Q8C7E9 / Q9H0L4
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 41361858
Gene end: 41388233
  
Corresponding Affymetrix probe sets: Dr.10325.1.A1_at (Zebrafish Array)   NM_200114_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000110939
Ensembl peptide - ENSDARP00000142205
Ensembl peptide - ENSDARP00000129952
Ensembl peptide - ENSDARP00000106787
NCBI entrez gene - 386806     See in Manteia.
RefSeq - NM_200114
RefSeq - XM_009291098
RefSeq Peptide - NP_956408
swissprot - Q7ZUX2
swissprot - A0A140LG27
swissprot - A0A0R4I9I2
swissprot - F1QWP0
ZFIN ID - ZDB-GENE-031118-2
Ensembl - ENSDARG00000090788
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSTF2ENSGALG00000006760Gallus gallus
 CSTF2ENSG00000101811Homo sapiens
 CSTF2TENSG00000177613Homo sapiens
 Cstf2ENSMUSG00000031256Mus musculus
 Cstf2tENSMUSG00000053536Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR025742  Cleavage stimulation factor subunit 2, hinge domain
 IPR026896  Transcription termination and cleavage factor, C-terminal domain
 IPR033105  Cleavage stimulation factor subunit 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0031124 mRNA 3"-end processing IEA
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation IBA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000014898 ncbp2 / Q8JGR6 / nuclear cap binding protein subunit 2 / Q9CQ49* / NCBP2L* / P52298* / A6PVI3* / nuclear cap binding protein subunit 2 like*  / complex / reaction
 ENSDARG00000018904 cstf3 / cleavage stimulation factor, 3 pre-RNA, subunit 3 / Q12996* / cleavage stimulation factor subunit 3*  / complex
 ENSDARG00000044820 cstf1 / cleavage stimulation factor, 3 pre-RNA, subunit 1 / Q05048* / Q99LC2* / cleavage stimulation factor subunit 1*  / complex






 

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