ENSDARG00000044820


Danio rerio

Features
Gene ID: ENSDARG00000044820
  
Biological name :cstf1
  
Synonyms : cleavage stimulation factor, 3 pre-RNA, subunit 1 / cstf1
  
Possible biological names infered from orthology : cleavage stimulation factor subunit 1 / Q05048 / Q99LC2
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 27817301
Gene end: 27827533
  
Corresponding Affymetrix probe sets: Dr.7120.1.A1_at (Zebrafish Array)   Dr.9379.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111131
Ensembl peptide - ENSDARP00000121074
Ensembl peptide - ENSDARP00000116178
Ensembl peptide - ENSDARP00000114660
Ensembl peptide - ENSDARP00000109556
NCBI entrez gene - 324238     See in Manteia.
RefSeq - NM_001328559
RefSeq Peptide - NP_001315488
swissprot - E9QCD8
swissprot - E9QES9
swissprot - F1QFK9
swissprot - E9QEG6
ZFIN ID - ZDB-GENE-030131-2958
Ensembl - ENSDARG00000044820
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSTF1ENSGALG00000007757Gallus gallus
 CSTF1ENSG00000101138Homo sapiens
 Cstf1ENSMUSG00000027498Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR032028  Cleavage stimulation factor subunit 1, dimerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000014898 ncbp2 / Q8JGR6 / nuclear cap binding protein subunit 2 / Q9CQ49* / NCBP2L* / P52298* / A6PVI3* / nuclear cap binding protein subunit 2 like*  / complex / reaction
 ENSDARG00000018904 cstf3 / cleavage stimulation factor, 3 pre-RNA, subunit 3 / Q12996* / cleavage stimulation factor subunit 3*  / complex
 ENSDARG00000090788 cstf2 / cleavage stimulation factor, 3 pre-RNA, subunit 2 / P33240* / CSTF2T* / Q8C7E9* / Q9H0L4* / Q8BIQ5* / cleavage stimulation factor subunit 2* / cleavage stimulation factor subunit 2 ...  / complex






 

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contact: otassy@igbmc.fr