ENSDARG00000021443


Danio rerio

Features
Gene ID: ENSDARG00000021443
  
Biological name :zfp36l1b
  
Synonyms : zfp36l1b / zinc finger protein 36, C3H type-like 1b
  
Possible biological names infered from orthology : P23950 / Q07352 / ZFP36L1 / ZFP36 ring finger protein like 1 / zinc finger protein 36, C3H type-like 1
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 9575374
Gene end: 9580446
  
Corresponding Affymetrix probe sets: Dr.24122.1.A1_at (Zebrafish Array)   NM_199649_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000011150
NCBI entrez gene - 323671     See in Manteia.
RefSeq - NM_199649
RefSeq Peptide - NP_955943
swissprot - Q6P3H0
ZFIN ID - ZDB-GENE-030131-2391
Ensembl - ENSDARG00000021443
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZFP36L1ENSGALG00000039228Gallus gallus
 Q07352ENSG00000185650Homo sapiens
 P23950ENSMUSG00000021127Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zfp36l1a / zinc finger protein 36, C3H type-like 1a / Q07352* / P23950* / ZFP36L1* / ZFP36 ring finger protein like 1* / zinc finger protein 36, C3H type-like 1*ENSDARG0000001615462
zfp36l2 / zinc finger protein 36, C3H type-like 2 / P23949* / P47974* / ZFP36 ring finger protein like 2*ENSDARG0000002180645
sb:cb81ENSDARG0000004050336
zgc:114130ENSDARG0000004072533
zgc:162730 / ZFP36* / ZFP36 ring finger protein*ENSDARG0000010372030
cth1 / cysteine three histidine 1ENSDARG0000005732822


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR007635  Tis11B-like protein, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0061158 3"-UTR-mediated mRNA destabilization IBA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000018530 mapkapk2b / mitogen-activated protein kinase-activated protein kinase 2b / P49138* / P49137* / MAPKAPK2* / MAP kinase-activated protein kinase 2 * / mitogen-activated protein kinase-activat...  / reaction
 ENSDARG00000013078 ywhaba / Q5PRD0 / tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a / YWHAB* / P31946* / tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activat...  / complex / reaction
 ENSDARG00000002552 mapkapk2a / mitogen-activated protein kinase-activated protein kinase 2a / P49138* / P49137* / MAPKAPK2* / MAP kinase-activated protein kinase 2 * / mitogen-activated protein kinase-activat...  / reaction






 

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