ENSDARG00000022614


Danio rerio

Features
Gene ID: ENSDARG00000022614
  
Biological name :ddx43
  
Synonyms : ddx43 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
  
Possible biological names infered from orthology : DDX53 / DEAD-box helicase 43 / DEAD-box helicase 53 / Q86TM3 / Q9NXZ2
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 27332656
Gene end: 27354033
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000044651
Ensembl peptide - ENSDARP00000092253
NCBI entrez gene - 100136871     See in Manteia.
RefSeq - NM_001328193
RefSeq Peptide - NP_001315122
swissprot - B8A610
swissprot - B8A609
ZFIN ID - ZDB-GENE-080204-77
Ensembl - ENSDARG00000022614
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000015928Gallus gallus
 DDX43ENSG00000080007Homo sapiens
 DDX53ENSG00000184735Homo sapiens
 Ddx43ENSMUSG00000070291Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-156n14.5 / DDX17* / Q92841* / DEAD-box helicase 17*ENSDARG0000001087328
ddx5 / DEAD (Asp-Glu-Ala-Asp) box helicase 5 / P17844* / DEAD-box helicase 5* / Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), transcript variant 3, mRNA.*ENSDARG0000003806828
ddx42 / DEAD (Asp-Glu-Ala-Asp) box helicase 42 / Q810A7* / Q86XP3* / DEAD-box helicase 42* / ATP-dependent RNA helicase DDX42 *ENSDARG0000003792827


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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