ENSGALG00000015928


Gallus gallus

Features
Gene ID: ENSGALG00000015928
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : DDX43 / DDX53 / DEAD-box helicase 43 / DEAD-box helicase 53 / Q86TM3 / Q9NXZ2
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 81819650
Gene end: 81835862
  
Corresponding Affymetrix probe sets: GgaAffx.10149.1.S1_at (Chicken Array)   GgaAffx.10149.2.S1_at (Chicken Array)   GgaAffx.10149.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025626
NCBI entrez gene - 428637     See in Manteia.
RefSeq - XM_426195
swissprot - F1NVJ6
Ensembl - ENSGALG00000015928
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx43ENSDARG00000022614Danio rerio
 DDX43ENSG00000080007Homo sapiens
 DDX53ENSG00000184735Homo sapiens
 Ddx43ENSMUSG00000070291Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDX17 / DEAD-box helicase 17 / Q501J6* / Q92841* / Probable ATP-dependent RNA helicase DDX17 *ENSGALG0000003736033
DDX5 / DEAD-box helicase 5 / P17844* / Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), transcript variant 3, mRNA.*ENSGALG0000000353231
DDX42 / ATP-dependent RNA helicase DDX42 / Q810A7* / Q86XP3* / DEAD-box helicase 42*ENSGALG0000000058130


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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