ENSDARG00000010873


Danio rerio

Features
Gene ID: ENSDARG00000010873
  
Biological name :si:dkey-156n14.5
  
Synonyms : si:dkey-156n14.5
  
Possible biological names infered from orthology : DDX17 / DEAD-box helicase 17 / Probable ATP-dependent RNA helicase DDX17 / Q501J6 / Q92841
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 22104565
Gene end: 22119697
  
Corresponding Affymetrix probe sets: Dr.10602.1.A1_at (Zebrafish Array)   Dr.2955.1.S1_at (Zebrafish Array)   Dr.7111.1.S1_a_at (Zebrafish Array)   Dr.7111.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000126010
Ensembl peptide - ENSDARP00000106130
NCBI entrez gene - 556764     See in Manteia.
RefSeq - NM_001326391
RefSeq Peptide - NP_001313320
swissprot - I3ISW2
swissprot - F1QBS1
ZFIN ID - ZDB-GENE-030131-18
Ensembl - ENSDARG00000010873
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX17ENSGALG00000037360Gallus gallus
 DDX17ENSG00000100201Homo sapiens
 Ddx17ENSMUSG00000055065Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx5 / DEAD (Asp-Glu-Ala-Asp) box helicase 5 / P17844* / DEAD-box helicase 5* / Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), transcript variant 3, mRNA.*ENSDARG0000003806861
ddx42 / DEAD (Asp-Glu-Ala-Asp) box helicase 42 / Q810A7* / Q86XP3* / DEAD-box helicase 42* / ATP-dependent RNA helicase DDX42 *ENSDARG0000003792832
ddx43 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 / DDX53* / Q9NXZ2* / Q86TM3* / DEAD-box helicase 43* / DEAD-box helicase 53*ENSDARG0000002261430


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
SUMOylation of transcription cofactors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000007438 ube2ib / Q9W6H5 / ubiquitin-conjugating enzyme E2Ib / UBE2I* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction
 ENSDARG00000044267 sumo1 / Q7SZR5 / small ubiquitin-like modifier 1 / P63166* / P63165* / Small ubiquitin-related modifier 1 *  / reaction / complex
 ENSDARG00000052649 Q9DDJ0 / ube2ia / ubiquitin-conjugating enzyme E2Ia / UBE2I* / P63280* / P63279* / ubiquitin conjugating enzyme E2 I*  / reaction






 

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