ENSDARG00000028507


Danio rerio

Features
Gene ID: ENSDARG00000028507
  
Biological name :itgb4
  
Synonyms : integrin, beta 4 / itgb4
  
Possible biological names infered from orthology : A2A863 / integrin subunit beta 4 / P16144
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 13106760
Gene end: 13159587
  
Corresponding Affymetrix probe sets: Dr.14191.1.A1_at (Zebrafish Array)   Dr.2232.1.S1_at (Zebrafish Array)   Dr.4920.1.A1_at (Zebrafish Array)   Dr.4920.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000031533
swissprot - F1RA51
ZFIN ID - ZDB-GENE-030131-7209
Ensembl - ENSDARG00000028507
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ITGB4ENSGALG00000002389Gallus gallus
 ITGB4ENSG00000132470Homo sapiens
 Itgb4ENSMUSG00000020758Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
itgb1b.1 / integrin, beta 1b.1ENSDARG0000005323214
itgb1a / integrin, beta 1a / ITGB1* / P05556* / P09055* / Integrin beta-1 * / integrin subunit beta 1*ENSDARG0000007186314
itgb6 / integrin, beta 6 / P18564* / Q9Z0T9* / integrin subunit beta 6*ENSDARG0000000249413
itgb5 / integrin, beta 5 / P18084* / integrin subunit beta 5*ENSDARG0000001294213
itgb2 / integrin, beta 2 / Itgb2l* / P05107* / Q3UV74* / integrin subunit beta 2* / Integrin beta-2-like protein *ENSDARG0000001693913
itgb3b / integrin beta 3b / ITGB3* / P05106* / O54890* / AC068234.1* / Integrin beta-3 * / integrin subunit beta 3*ENSDARG0000004507013
itgb3a / integrin beta 3a / ITGB3* / P05106* / AC068234.1* / integrin subunit beta 3*ENSDARG0000005676713
itgb7 / integrin, beta 7 / P26010* / P26011* / integrin subunit beta 7*ENSDARG0000004431812
itgb1b.1 / itgb1b.2 / integrin, beta 1b.2ENSDARG0000002268910
itgb8 / integrin, beta 8 / P26012* / integrin subunit beta 8*ENSDARG0000002822210
itgb1b / integrin, beta 1b / ITGB1* / P05556* / integrin subunit beta 1*ENSDARG000001044849
CABZ01058721.1 / ITGB1* / P05556* / integrin subunit beta 1*ENSDARG000001099295
itgbl1 / integrin, beta-like 1 / O95965* / Q8VDV0* / integrin subunit beta like 1* / Integrin beta-like protein 1 *ENSDARG000000409854


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002369  Integrin beta subunit, VWA domain
 IPR003644  Na-Ca exchanger/integrin-beta4
 IPR003961  Fibronectin type III
 IPR012013  Integrin beta-4 subunit
 IPR012896  Integrin beta subunit, tail
 IPR013032  EGF-like, conserved site
 IPR013783  Immunoglobulin-like fold
 IPR015812  Integrin beta subunit
 IPR016201  PSI domain
 IPR033760  Integrin beta N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007229 integrin-mediated signaling pathway IEA
 biological_processGO:0031581 hemidesmosome assembly IEA
 biological_processGO:0048870 cell motility IEA
 cellular_componentGO:0008305 integrin complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Assembly of collagen fibrils and other multimeric structures
Laminin interactions
Type I hemidesmosome assembly


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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