ENSDARG00000031954


Danio rerio

Features
Gene ID: ENSDARG00000031954
  
Biological name :rbck1
  
Synonyms : RanBP-type and C3HC4-type zinc finger containing 1 / rbck1
  
Possible biological names infered from orthology : Q9BYM8 / Q9WUB0 / RANBP2-type and C3HC4-type zinc finger containing 1
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 10145098
Gene end: 10165446
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000047443
Ensembl peptide - ENSDARP00000113670
Ensembl peptide - ENSDARP00000119127
Ensembl peptide - ENSDARP00000140102
NCBI entrez gene - 431715     See in Manteia.
RefSeq - NM_001002168
RefSeq - XM_021469313
RefSeq - XM_021469314
RefSeq Peptide - NP_001002168
swissprot - Q1LXG6
swissprot - Q6GMF9
swissprot - F1QRZ7
ZFIN ID - ZDB-GENE-040704-3
Ensembl - ENSDARG00000031954
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBCK1ENSG00000125826Homo sapiens
 Rbck1ENSMUSG00000027466Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A9JTG5 / shrprbck1r / sharpin and rbck1 related / Q9H0F6* / Q91WA6* / SHARPIN* / SHANK associated RH domain interactor*ENSDARG0000005987145
sharpin / SHANK-associated RH domain interacting protein / Q91WA6* / Q9H0F6* / SHANK associated RH domain interactor*ENSDARG0000007699513


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR001841  Zinc finger, RING-type
 IPR001876  Zinc finger, RanBP2-type
 IPR002867  IBR domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IMP
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of TNFR1 signaling
TNFR1-induced NFkappaB signaling pathway
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001273 ventral mandibular arch ventral mandibular arch decreased length , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch decreased size , abnormal
pharyngeal arch disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000017037 ikbkg / inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma / Q9Y6K9* / O88522* / NF-kappa-B essential modulator * / inhibitor of nuclear factor kappa B kinase subunit gamma*  / complex / reaction
 ENSDARG00000059871 A9JTG5 / shrprbck1r / sharpin and rbck1 related / Q9H0F6* / Q91WA6* / SHARPIN* / SHANK associated RH domain interactor*  / complex
 ENSDARG00000076995 sharpin / SHANK-associated RH domain interacting protein / Q91WA6* / Q9H0F6* / SHANK associated RH domain interactor*  / complex
 ENSDARG00000079123 ikbkb / inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta / O14920* / inhibitor of kappaB kinase beta* / inhibitor of nuclear factor kappa B kinase subunit beta*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr